View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14469_low_6 (Length: 384)
Name: NF14469_low_6
Description: NF14469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14469_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 47058764 - 47059019
Alignment:
| Q |
19 |
tcaatgtcatacacatgaaatctgaaagaaagcaaaataaggg--------agagagatagttacatataaatcaaatcagaaagaagtcttgtaatcta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47058764 |
tcaatgtcatacacatgaaatctgaaagaaagcaaaataagggggagagagagagagagagttacatataaatcaaatcagaaagaagtcttgtaatcta |
47058863 |
T |
|
| Q |
111 |
atagctatatacacatgaaaccttaggaagatgaaggatagcttacacaagtggttgcacaatctcgaaatgaaatacaatgttaattttttctatccat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47058864 |
atagctatatacacatgaaaccttaggaagatgaaggatagcttacacaagtggttgcacaatctcgaaatgaaatgcaatgttaattttttctatccat |
47058963 |
T |
|
| Q |
211 |
tctggattcaaacaattcgttatgacttcagtgcttcctaattcttcaaatttccc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47058964 |
tctggattcaaacaattcgttatgacttcagtgcttcctaattcttcaaatttccc |
47059019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 139 - 257
Target Start/End: Original strand, 47076914 - 47077032
Alignment:
| Q |
139 |
agatgaaggatagcttacacaagtggttgcacaatctcgaaatgaaatacaatgttaattttttctatccattctggattcaaacaattcgttatgactt |
238 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
47076914 |
agatggaggataacttacacaagtggttgcaccatctcaaaatgaaatgcaatactaattttttctatccattctggattcaaagaatttggtatgactt |
47077013 |
T |
|
| Q |
239 |
cagtgcttcctaattcttc |
257 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
47077014 |
cagtgcgtcctaattcttc |
47077032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 47059049 - 47059090
Alignment:
| Q |
320 |
ggggaaaactgttttttgttgttgcaatttaaccctcgccac |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47059049 |
ggggaaaactgttttttgttgttgcaatttaaccctcgccac |
47059090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 47076758 - 47076807
Alignment:
| Q |
19 |
tcaatgtcatacacatgaaatctgaaagaaagcaaaataagggagagaga |
68 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
47076758 |
tcaatgtcatacacatgaaacctgaaagatagcaaaatgagggggagaga |
47076807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 18229311 - 18229191
Alignment:
| Q |
143 |
gaaggatagcttacacaagtggttgcacaatctcgaaatgaaatacaatgttaattttttctatccattctggattcaaacaattcgttatgacttcagt |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
18229311 |
gaagaatagcttacacaagtggttgcacaatctcgaaatgaaatgcaatattaattttctctatccattctggatttaaactgttcgttatgacttcagt |
18229212 |
T |
|
| Q |
243 |
gcttcctaattcttcaaattt |
263 |
Q |
| |
|
|| |||||||||||| ||||| |
|
|
| T |
18229211 |
gcgtcctaattcttccaattt |
18229191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 18229423 - 18229389
Alignment:
| Q |
19 |
tcaatgtcatacacatgaaatctgaaagaaagcaa |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18229423 |
tcaatgtcatacacatgaaatctgaaagaaagcaa |
18229389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University