View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14469_low_8 (Length: 303)

Name: NF14469_low_8
Description: NF14469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14469_low_8
NF14469_low_8
[»] chr5 (13 HSPs)
chr5 (49-260)||(36974110-36974321)
chr5 (148-248)||(5367648-5367750)
chr5 (120-220)||(38037340-38037440)
chr5 (143-248)||(4942486-4942593)
chr5 (120-219)||(30471714-30471813)
chr5 (145-248)||(33494800-33494904)
chr5 (145-219)||(15558561-15558635)
chr5 (49-92)||(36603733-36603776)
chr5 (145-210)||(39955184-39955249)
chr5 (52-104)||(12383971-12384023)
chr5 (52-92)||(24434113-24434153)
chr5 (49-92)||(21067612-21067655)
chr5 (53-92)||(24233172-24233211)
[»] chr4 (17 HSPs)
chr4 (118-243)||(25479664-25479790)
chr4 (114-218)||(32212731-32212835)
chr4 (122-218)||(6077960-6078055)
chr4 (52-108)||(43159835-43159891)
chr4 (114-219)||(45047162-45047267)
chr4 (113-233)||(46061451-46061571)
chr4 (146-219)||(1586426-1586499)
chr4 (49-104)||(3427850-3427905)
chr4 (147-212)||(22702362-22702427)
chr4 (147-212)||(22991690-22991755)
chr4 (49-109)||(27756449-27756509)
chr4 (153-209)||(41248328-41248384)
chr4 (52-111)||(38509905-38509964)
chr4 (49-107)||(55997785-55997843)
chr4 (172-248)||(8757330-8757407)
chr4 (148-185)||(8757403-8757440)
chr4 (49-105)||(19328804-19328860)
[»] chr3 (14 HSPs)
chr3 (145-233)||(7885918-7886007)
chr3 (143-233)||(53143503-53143594)
chr3 (122-218)||(377077-377173)
chr3 (142-250)||(45707581-45707690)
chr3 (55-109)||(42411015-42411069)
chr3 (52-108)||(36545219-36545275)
chr3 (52-108)||(36563039-36563095)
chr3 (53-108)||(42388720-42388775)
chr3 (173-231)||(21079900-21079958)
chr3 (114-172)||(48457937-48457995)
chr3 (52-105)||(29247295-29247348)
chr3 (52-92)||(50175352-50175392)
chr3 (118-174)||(51305872-51305928)
chr3 (53-105)||(52397377-52397429)
[»] chr1 (19 HSPs)
chr1 (136-218)||(7789689-7789771)
chr1 (144-213)||(32913841-32913910)
chr1 (122-219)||(33259485-33259581)
chr1 (122-219)||(33279644-33279740)
chr1 (144-219)||(5041031-5041106)
chr1 (145-210)||(5114085-5114150)
chr1 (113-218)||(33603486-33603591)
chr1 (148-233)||(7712293-7712379)
chr1 (114-212)||(42483748-42483846)
chr1 (144-212)||(31206408-31206477)
chr1 (49-108)||(1408599-1408658)
chr1 (149-210)||(32544941-32545002)
chr1 (148-212)||(8444908-8444972)
chr1 (52-103)||(42514283-42514334)
chr1 (53-108)||(45485081-45485136)
chr1 (52-92)||(6754154-6754194)
chr1 (52-108)||(19940639-19940695)
chr1 (52-91)||(4941235-4941274)
chr1 (157-210)||(31827138-31827191)
[»] chr7 (10 HSPs)
chr7 (114-248)||(42710528-42710663)
chr7 (126-212)||(33174108-33174194)
chr7 (144-248)||(25795894-25795998)
chr7 (120-212)||(17603863-17603955)
chr7 (113-248)||(34975576-34975711)
chr7 (136-212)||(9486878-9486954)
chr7 (52-92)||(37720594-37720634)
chr7 (191-245)||(46209114-46209168)
chr7 (52-109)||(47903925-47903982)
chr7 (119-212)||(34833715-34833805)
[»] chr2 (17 HSPs)
chr2 (114-248)||(39445800-39445935)
chr2 (144-217)||(45154285-45154358)
chr2 (114-218)||(37847915-37848019)
chr2 (136-202)||(9043124-9043190)
chr2 (144-203)||(4633912-4633973)
chr2 (141-233)||(18379809-18379910)
chr2 (70-109)||(35619055-35619094)
chr2 (70-109)||(35627060-35627099)
chr2 (50-108)||(27322729-27322787)
chr2 (52-108)||(25627381-25627437)
chr2 (146-190)||(27974564-27974608)
chr2 (146-190)||(28061093-28061137)
chr2 (52-102)||(1991950-1992000)
chr2 (136-173)||(27974486-27974523)
chr2 (136-173)||(28061015-28061052)
chr2 (191-243)||(449167-449219)
chr2 (52-92)||(33085399-33085439)
[»] chr6 (5 HSPs)
chr6 (114-219)||(11703212-11703317)
chr6 (145-233)||(31632393-31632482)
chr6 (148-233)||(24141341-24141427)
chr6 (153-210)||(33099582-33099639)
chr6 (148-246)||(30250257-30250365)
[»] scaffold0067 (1 HSPs)
scaffold0067 (114-243)||(213-344)
[»] chr8 (4 HSPs)
chr8 (146-219)||(1421921-1421994)
chr8 (50-108)||(9799289-9799347)
chr8 (52-109)||(39609728-39609785)
chr8 (49-92)||(40995859-40995902)
[»] scaffold0092 (1 HSPs)
scaffold0092 (144-203)||(4888-4947)
[»] scaffold0316 (1 HSPs)
scaffold0316 (52-109)||(1264-1321)
[»] scaffold0027 (1 HSPs)
scaffold0027 (52-108)||(14209-14265)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 49 - 260
Target Start/End: Original strand, 36974110 - 36974321
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtgttcgaagaccttctaacaaaagattttaatgagttccacc 148  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  36974110 gaagagttgacaacacaagttctaatgcaatatttactacatttgttttcttaaccagtgttcgaagaccttctaacaaaaggttttaatgggttccacc 36974209  T
Q  149 aataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaatcacttaagaatagggtcttaaatgag 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  36974210 aataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgggatcacttaagaatggggtcttaagtgag 36974309  T
Q  249 gcatcgaatctt 260  Q
     ||||| |||||    
T  36974310 acatcggatctt 36974321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 5367750 - 5367648
Alignment:
Q  148 caataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaa-tcacttaagaatag-ggtcttaaat 245  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||| |||| ||| |||||||||||||| |||||||| |    
T  5367750 caataactctttatcatttacatttcaacaaaagtaactaaacaatgattattttattaaaaagttgtgtagaattcacttaagaatagaggtcttaatt 5367651  T
Q  246 gag 248  Q
    |||    
T  5367650 gag 5367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 38037440 - 38037340
Alignment:
Q  120 tctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgg 219  Q
    ||||||||||  ||| |||| |||||||||||||||||||||||||||||||| || |||||||||  |||||| ||||||||| ||||||||| |||||    
T  38037440 tctaacaaaaagtttaaatgggttccaccaataactctttatcatttacattttaataaaagcaacataacaatgattattttattaaaaagtgatgtgg 38037341  T
Q  220 a 220  Q
    |    
T  38037340 a 38037340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 4942486 - 4942593
Alignment:
Q  143 tccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaat-cacttaagaat-agggtct 240  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| || ||| ||||||||| |||||||| ||||||  | ||||||||||| |||||||    
T  4942486 tccaccaataactctttatcatttacatttcaacataagtaactaaataatgattattttattaaaaagttgtgtggggtccacttaagaatgagggtct 4942585  T
Q  241 taaatgag 248  Q
    ||| ||||    
T  4942586 taagtgag 4942593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 30471813 - 30471714
Alignment:
Q  120 tctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgg 219  Q
    ||||||||||| | | |||| |  ||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||| |||||||| ||||||    
T  30471813 tctaacaaaaggtctaaatgggacccaccaataactctttatcatttacatttaaacaaaagtaactaaacaatgattattttattaaaaagttgtgtgg 30471714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 33494800 - 33494904
Alignment:
Q  145 caccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaatc-acttaagaatagggtcttaa 243  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||| | | ||||| |||||||| |||||  ||| |||||||||| |||||||||    
T  33494800 caccaataactctttattatttacatttcaacaaaagtaattcaacaatgactgttttattaaaaagttgtgtgagatctacttaagaatggggtcttaa 33494899  T
Q  244 atgag 248  Q
     ||||    
T  33494900 gtgag 33494904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 15558635 - 15558561
Alignment:
Q  145 caccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgg 219  Q
    ||||||||||||||||||||||| |||| |||| ||| |||| |||||| ||||||||| |||||||| ||||||    
T  15558635 caccaataactctttatcatttatattttaacagaagtaactaaacaatgattattttattaaaaagttgtgtgg 15558561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 36603733 - 36603776
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacattt 92  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  36603733 gaagagttgacaacacaagttccaatgcaatacttactgcattt 36603776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 39955184 - 39955249
Alignment:
Q  145 caccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaa 210  Q
    ||||||||||| |||| ||||||||||||||||||| ||||| | |||| ||||||||| ||||||    
T  39955184 caccaataactatttaccatttacatttcaacaaaaacaacttaccaataattattttattaaaaa 39955249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 12383971 - 12384023
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaacc 104  Q
    ||||||||||||||| || |||| ||||||||||||||||| |||| ||||||    
T  12383971 gagttgacaacacaaatttcaattcaatacttactacatttgtttttttaacc 12384023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 24434153 - 24434113
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacattt 92  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  24434153 gagttgacaacacaagtttcaatgcaatgcttactacattt 24434113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 21067655 - 21067612
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacattt 92  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||    
T  21067655 gaagagatgacaacacaagtttcaatgtaatacttactacattt 21067612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 24233211 - 24233172
Alignment:
Q  53 agttgacaacacaagttccaatgcaatacttactacattt 92  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  24233211 agttgacagcacaagttccaatgcaatacttattacattt 24233172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 25479790 - 25479664
Alignment:
Q  118 cttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgt 217  Q
    ||||||||||||  | | ||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  25479790 cttctaacaaaatgtataaatgactccctccaataactctttatcatttacatttcaacaaaagtaactcaacaattactattttattaaaaagtggtgt 25479691  T
Q  218 g-gaatcacttaagaatagggtcttaa 243  Q
    | ||  ||||||||||| |||||||||    
T  25479690 gagatccacttaagaatggggtcttaa 25479664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 32212731 - 32212835
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtg 213  Q
    ||||| ||||||||||| | | |||| || ||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||| |||||||||    
T  32212731 agaccctctaacaaaaggtctaaatgggtcccaccaataactctttatcatttacatttcaacaaaagcaattgaaaaatgattattttattaaaaagtg 32212830  T
Q  214 gtgtg 218  Q
    |||||    
T  32212831 gtgtg 32212835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 6077960 - 6078055
Alignment:
Q  122 taacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtg 218  Q
    |||||||| |||| ||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||| ||||||||| ||||    
T  6077960 taacaaaatatttaaatgagtcccaccaataactctttgtcatttac-tttcaacaaaaacaactcaacaatgattattttattaaaaagtgttgtg 6078055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 43159891 - 43159835
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43159891 gagttgacaacacaagttccaatgcaatacttactacatttgttttcttaaccagtg 43159835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 45047162 - 45047267
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtg 213  Q
    ||||| ||||||||||  ||| ||||||  ||||||||| |||||||||||||||||||||||||||  |||| |||||| ||||||||| ||||| ||     
T  45047162 agaccctctaacaaaatgtttaaatgagacccaccaatagctctttatcatttacatttcaacaaaaataactaaacaatgattattttattaaaatgtt 45047261  T
Q  214 gtgtgg 219  Q
    ||||||    
T  45047262 gtgtgg 45047267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 46061451 - 46061571
Alignment:
Q  113 aagaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    |||||| ||||| |||| || | ||||||| |||||| ||| |||| || ||||||||||||||||||| ||||||||||| ||||||||| |||||| |    
T  46061451 aagaccatctaataaaatatctaaatgagtaccaccagtaagtctt-attatttacatttcaacaaaagaaactcaacaatgattattttattaaaaact 46061549  T
Q  213 ggtgtggaat-cacttaagaat 233  Q
     |||||| || |||||||||||    
T  46061550 agtgtggtatccacttaagaat 46061571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 1586499 - 1586426
Alignment:
Q  146 accaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgg 219  Q
    |||||||||||||||||||||||||||||| ||||| || | |||||| ||||||||| |||||| | ||||||    
T  1586499 accaataactctttatcatttacatttcaataaaagtaattaaacaatgattattttattaaaaatttgtgtgg 1586426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 3427905 - 3427850
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacatttattttcttaacc 104  Q
    ||||||||||||||||||||| |||| |||||||||||||||||  ||||||||||    
T  3427905 gaagagttgacaacacaagtttcaatacaatacttactacatttgatttcttaacc 3427850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 22702362 - 22702427
Alignment:
Q  147 ccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    ||||||||||||||||||||| |||| ||||||||  ||| |||||| ||||||||| ||||||||    
T  22702362 ccaataactctttatcatttatattttaacaaaagtgactaaacaataattattttattaaaaagt 22702427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 22991755 - 22991690
Alignment:
Q  147 ccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    ||||||||||||||||||||| |||| ||||||||  ||| |||||| ||||||||| ||||||||    
T  22991755 ccaataactctttatcatttatattttaacaaaagtgactaaacaataattattttattaaaaagt 22991690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 27756509 - 27756449
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtgt 109  Q
    |||||||||||||||||| || ||||| ||||||||||||||||  || ||||||||||||    
T  27756509 gaagagttgacaacacaaatttcaatgtaatacttactacatttgattccttaaccagtgt 27756449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 41248384 - 41248328
Alignment:
Q  153 actctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaa 209  Q
    ||||||||||||||||||||||||||||||||    ||||| |||||||||||||||    
T  41248384 actctttatcatttacatttcaacaaaagcaaaaatacaatgattattttaataaaa 41248328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 38509964 - 38509905
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtgttc 111  Q
    ||||||||||||||||||||||||||||| ||| |||||||  || |||||| |||||||    
T  38509964 gagttgacaacacaagttccaatgcaatatttattacatttgattccttaacaagtgttc 38509905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 55997785 - 55997843
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagt 107  Q
    |||||||||||| || |||||||||| ||||||||| |||||||| |||||||| ||||    
T  55997785 gaagagttgacagcataagttccaatacaatacttattacatttaatttcttaatcagt 55997843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 8757407 - 8757330
Alignment:
Q  172 tcaacaaaagcaactcaacaattattattttaataaaaagtggtgtg-gaatcacttaagaatagggtcttaaatgag 248  Q
    ||||||||| ||||| | |||| ||||||||| |||||||||||||| || ||| ||||||||  |||||||| ||||    
T  8757407 tcaacaaaaacaactaaccaatgattattttattaaaaagtggtgtgagattcagttaagaatgaggtcttaagtgag 8757330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 8757440 - 8757403
Alignment:
Q  148 caataactctttatcatttacatttcaacaaaagcaac 185  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  8757440 caataactttttatcatttacatttcaacaaaatcaac 8757403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 19328860 - 19328804
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacatttattttcttaacca 105  Q
    |||||||||| | |||||||||||||| ||||||||| ||||||   ||||||||||    
T  19328860 gaagagttgatagcacaagttccaatgtaatacttaccacatttgacttcttaacca 19328804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 7886007 - 7885918
Alignment:
Q  145 caccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaat-cacttaagaat 233  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||    
T  7886007 caccaataactctttatcatttatatttcaacaaaagcaactcaacaattattattttattaaaaagttgtgtgggatccacttaagaat 7885918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 53143594 - 53143503
Alignment:
Q  143 tccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaat-cacttaagaat 233  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||| |||||| || |||||||||||    
T  53143594 tccaccaataactctttatcatttacatttcaacaaaagtaactaaacaataattattttattaaaaagttgtgtgggatccacttaagaat 53143503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 377173 - 377077
Alignment:
Q  122 taacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtg 218  Q
    |||||||| |||| ||||||||| |  ||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  377173 taacaaaatatttaaatgagttctaggaataactttttatcatttacgtttcaacaaaagcaattcaacaatcattattttattaaaaagtggtgtg 377077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 45707690 - 45707581
Alignment:
Q  142 ttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtg-gaatcacttaagaatagggtct 240  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| | || ||||||||| ||| |||||||||| ||  ||||||| |||  |||||    
T  45707690 ttccacaaacaactctttatcatttacatttcaacaaaagcaactcatcgataattattttattaagaagtggtgtgagatccacttaaaaatgaggtct 45707591  T
Q  241 taaatgaggc 250  Q
    ||| ||||||    
T  45707590 taagtgaggc 45707581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 42411069 - 42411015
Alignment:
Q  55 ttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtgt 109  Q
    |||||||| |||||||||||||||||||||||||||||   ||||||||||||||    
T  42411069 ttgacaacgcaagttccaatgcaatacttactacatttcacttcttaaccagtgt 42411015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 36545219 - 36545275
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    ||||||||| |||||||| |||| ||||||||||||||||| |||  ||||||||||    
T  36545219 gagttgacatcacaagttacaatacaatacttactacatttgtttcgttaaccagtg 36545275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 36563095 - 36563039
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    ||||||||| |||||||| |||| ||||||||||||||||| |||  ||||||||||    
T  36563095 gagttgacatcacaagttacaatacaatacttactacatttgtttcgttaaccagtg 36563039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 42388775 - 42388720
Alignment:
Q  53 agttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    |||||||| ||||| ||||||| |||||||||||||||||   |||||||||||||    
T  42388775 agttgacagcacaaattccaatacaatacttactacatttgacttcttaaccagtg 42388720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 21079958 - 21079900
Alignment:
Q  173 caacaaaagcaactcaacaattattattttaataaaaagtggtgtggaatcacttaaga 231  Q
    |||||||| |||||||| ||| ||||||||| | ||||||||||||||  |||||||||    
T  21079958 caacaaaaacaactcaaaaatgattattttattgaaaagtggtgtggatccacttaaga 21079900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 48457995 - 48457937
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacattt 172  Q
    ||||| ||||||||||| | | |||| |  |||||||||||||||||||||||||||||    
T  48457995 agaccctctaacaaaaggtctaaatgggacccaccaataactctttatcatttacattt 48457937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 29247348 - 29247295
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaacca 105  Q
    ||||||| |||||||||||||||| |||| || ||||||||| || ||||||||    
T  29247348 gagttgataacacaagttccaatgtaatattttctacatttaattccttaacca 29247295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 50175392 - 50175352
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacattt 92  Q
    ||||||||||||||| |||||||||||||||| ||| ||||    
T  50175392 gagttgacaacacaaattccaatgcaatactttctatattt 50175352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 51305928 - 51305872
Alignment:
Q  118 cttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttca 174  Q
    |||||||||||| |||| |||||||||||| | ||||| || |||||||| ||||||    
T  51305928 cttctaacaaaaaatttaaatgagttccactactaacttttaatcatttaaatttca 51305872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 52397429 - 52397377
Alignment:
Q  53 agttgacaacacaagttccaatgcaatacttactacatttattttcttaacca 105  Q
    |||||||||||||| ||| |||| ||||||| ||||||||| || ||||||||    
T  52397429 agttgacaacacaaattctaatgtaatactttctacatttaattccttaacca 52397377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 7789771 - 7789689
Alignment:
Q  136 aatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtg 218  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  7789771 aatgagtatcaccaataactctttatcatttacatttcaacaaaagcaactcaacaatgattattttattaaaaagtgatgtg 7789689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 32913910 - 32913841
Alignment:
Q  144 ccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtg 213  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  32913910 ccactaataactctttatcatttacatttcaacaaaagcaactcaacagtgattattttattaaaaagtg 32913841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 33259485 - 33259581
Alignment:
Q  122 taacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgg 219  Q
    ||||||||| ||| ||||||  |||||||||| | ||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||||||    
T  33259485 taacaaaaggtttaaatgagacccaccaataattttttatcatttacatttcaacaaaagtaactcaacaa-tgttattttattaaaaagtggtgtgg 33259581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 33279644 - 33279740
Alignment:
Q  122 taacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgg 219  Q
    ||||||||| ||| ||||||  |||||||||| | ||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||||||    
T  33279644 taacaaaaggtttaaatgagacccaccaataattttttatcatttacatttcaacaaaagtaactcaacaa-tgttattttattaaaaagtggtgtgg 33279740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 5041031 - 5041106
Alignment:
Q  144 ccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgg 219  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||| |||||||||| ||||    
T  5041031 ccaccaataactttttatcatttatatttcaacaaaaacaactcaacaatgattattttattaaaaagtggagtgg 5041106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 5114085 - 5114150
Alignment:
Q  145 caccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaa 210  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  5114085 caccaataactcttcatcatttacatttcaacaaaaacaactcaacaataattattttattaaaaa 5114150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 33603486 - 33603591
Alignment:
Q  113 aagaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    |||| ||||||||||||  ||| |||| ||   |||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||| ||||||||    
T  33603486 aagatcttctaacaaaatgtttaaatgggtcataccaataactctttatcatttacatttcaacaaaagtaaccaaacaatgattattttattaaaaagt 33603585  T
Q  213 ggtgtg 218  Q
    | ||||    
T  33603586 gatgtg 33603591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 7712293 - 7712379
Alignment:
Q  148 caataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaat-cacttaagaat 233  Q
    |||||||| |||||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||||||| | |||||||||||    
T  7712293 caataactttttatcatttacatttcaacaaaaacaactcaataatgattattttatttaaaagttgtgtggagtccacttaagaat 7712379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 42483748 - 42483846
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    ||||| |||||||||| || | | || || ||||||||||||| ||||||||||||||||||||||| |||    ||||| ||||||||||||||||||    
T  42483748 agaccctctaacaaaatatctaactgggtcccaccaataactcattatcatttacatttcaacaaaaacaataatacaatgattattttaataaaaagt 42483846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 31206408 - 31206477
Alignment:
Q  144 ccaccaataactcttt-atcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    |||||||||||||||| |||||||| ||||||||||||  ||||||||||| ||||||||| ||||||||    
T  31206408 ccaccaataactcttttatcatttatatttcaacaaaaagaactcaacaatgattattttattaaaaagt 31206477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 1408658 - 1408599
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    ||||||||||||||||||||||||||| || | ||||||||||||  |||||||||||||    
T  1408658 gaagagttgacaacacaagttccaatgtaaaaattactacatttaaattcttaaccagtg 1408599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 32545002 - 32544941
Alignment:
Q  149 aataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaa 210  Q
    ||||||||||||| ||||||||||||| |||||||||   ||||| ||||||||||||||||    
T  32545002 aataactctttattatttacatttcaataaaagcaacattacaatgattattttaataaaaa 32544941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 8444972 - 8444908
Alignment:
Q  148 caataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    |||||||||||||| |||||||||||||||||| |||  | || || ||||||||||||||||||    
T  8444972 caataactctttattatttacatttcaacaaaaacaatactacgatgattattttaataaaaagt 8444908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 42514283 - 42514334
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaac 103  Q
    ||||||||||||||| || | ||||||||||||||||||||| |||||||||    
T  42514283 gagttgacaacacaaatttctatgcaatacttactacatttactttcttaac 42514334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 45485081 - 45485136
Alignment:
Q  53 agttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    |||||||||||||| || ||||||||||||||||| |||| |||||||||| ||||    
T  45485081 agttgacaacacaaatttcaatgcaatacttactatatttgttttcttaactagtg 45485136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 6754154 - 6754194
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacattt 92  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  6754154 gagttgacgacacaagttccaatgcaatatttactacattt 6754194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 19940639 - 19940695
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    ||||||||| || ||||| ||||||||||||||||||||||  || |||||||||||    
T  19940639 gagttgacagcataagtttcaatgcaatacttactacatttgattccttaaccagtg 19940695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 4941235 - 4941274
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatt 91  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  4941235 gagttgacaacacaagtttcaatgcaataattactacatt 4941274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 31827191 - 31827138
Alignment:
Q  157 tttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaa 210  Q
    ||||||||||||||||||||||| |||||   | ||| ||||||||||||||||    
T  31827191 tttatcatttacatttcaacaaatgcaacagtataatgattattttaataaaaa 31827138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 42710528 - 42710663
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtg 213  Q
    ||||| ||||||||||| | | ||||||  | |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||     
T  42710528 agaccctctaacaaaaggtctaaatgagaccaaccaataactctttatcatttacatttcaacaaaagtaattcaacaatgattattttattaaaaagtt 42710627  T
Q  214 gtgt-ggaatcacttaagaatagggtcttaaatgag 248  Q
    |||| ||  |||||||||||| | ||||||| ||||    
T  42710628 gtgtggggttcacttaagaatggagtcttaagtgag 42710663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 33174108 - 33174194
Alignment:
Q  126 aaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    |||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||||||   ||||| |||||||||| |||||||    
T  33174108 aaaaaatttaaatgggttccaccaataactctttatcatatacatttcaacaaaagcaacaatacaatgattattttaagaaaaagt 33174194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 25795894 - 25795998
Alignment:
Q  144 ccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaat-cacttaagaatagggtctta 242  Q
    |||||||||||||||||||||||||||||||||||||  |||| |||||| ||||||||| || ||||| ||||||  | |||||| |||| ||||||||    
T  25795894 ccaccaataactctttatcatttacatttcaacaaaaataactaaacaatgattattttattagaaagttgtgtggggtccacttatgaat-gggtctta 25795992  T
Q  243 aatgag 248  Q
    ||||||    
T  25795993 aatgag 25795998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 17603863 - 17603955
Alignment:
Q  120 tctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    |||| |||||||||| |||| |  |||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| ||| ||||    
T  17603863 tctagcaaaagatttaaatgggacccaccaataactctttatcatttacatttcaataaaagtaactaaacaatgattattttattaacaagt 17603955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 34975576 - 34975711
Alignment:
Q  113 aagaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    |||||| ||||| |||| || | ||||| | ||| |||||||||||||||||| | |||||||||||||||| |||||||| || |||||  ||||||||    
T  34975576 aagaccatctaataaaatatatgaatgaatcccatcaataactctttatcattaatatttcaacaaaagcaattcaacaatgatgatttttttaaaaagt 34975675  T
Q  213 ggtgtggaatcacttaagaat-agggtcttaaatgag 248  Q
    ||||  ||  ||||||||||| |||||||||| ||||    
T  34975676 ggtg-agatccacttaagaatgagggtcttaagtgag 34975711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 9486878 - 9486954
Alignment:
Q  136 aatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    |||||| | |||||||||||||||||||||||||||| ||||||| || |   ||||| ||||||||||||| ||||    
T  9486878 aatgagctacaccaataactctttatcatttacattttaacaaaaacatcaatacaatgattattttaataataagt 9486954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 37720594 - 37720634
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacattt 92  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  37720594 gagttgacagcacatgttccaatgcaatacttactacattt 37720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 46209114 - 46209168
Alignment:
Q  191 aattattattttaataaaaagtggtgtggaatcacttaagaatagggtcttaaat 245  Q
    ||||||||||||||||||||||| ||||||  || ||||||||  ||||||||||    
T  46209114 aattattattttaataaaaagtgatgtggatccatttaagaatgaggtcttaaat 46209168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 47903925 - 47903982
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtgt 109  Q
    ||||||||||||||| |||||||| |||||||| |||||||  |  ||||||||||||    
T  47903925 gagttgacaacacaaattccaatgtaatacttattacatttgatcccttaaccagtgt 47903982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 34833805 - 34833715
Alignment:
Q  119 ttctaacaaaagattttaatgagttccaccaataac-tctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagt 212  Q
    ||||||||||| || | ||||  ||||||||||||| | ||||||||||   ||||||||||| ||| |||||||| | ||||||||||||||||    
T  34833805 ttctaacaaaatatataaatggattccaccaataacttttttatcattt---tttcaacaaaaacaattcaacaatga-tattttaataaaaagt 34833715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 39445935 - 39445800
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtg 213  Q
    ||||| || |||||||| ||| |||| | ||||||||||||||||||| ||||||||||||||||||  |||| |||||| ||||||||| ||||||||     
T  39445935 agaccctccaacaaaaggtttaaatgggatccaccaataactctttattatttacatttcaacaaaaataactaaacaatgattattttattaaaaagtt 39445836  T
Q  214 gtgtggaat-cacttaagaatagggtcttaaatgag 248  Q
    ||||||  | ||||||||||| ||||||||| ||||    
T  39445835 gtgtggggtccacttaagaatggggtcttaagtgag 39445800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 45154358 - 45154285
Alignment:
Q  144 ccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgt 217  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||    
T  45154358 ccaccaataactctttattatttacatttcaacaaaaacaattcaacaataattattttattaaaaagtggtgt 45154285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 37848019 - 37847915
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtg 213  Q
    ||||||| ||||||||| ||| ||||  |  ||| ||||||| |||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||    
T  37848019 agaccttttaacaaaaggtttaaatggttgacacaaataactatttatcatttacattttaacaaaaacaactcaacgatgattattttaataaaaagtg 37847920  T
Q  214 gtgtg 218  Q
    |||||    
T  37847919 gtgtg 37847915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 9043124 - 9043190
Alignment:
Q  136 aatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattatttt 202  Q
    ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  9043124 aatgacttccactaataattctttatcatttatatttcaacaaaagcaactcaataatgattatttt 9043190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 4633973 - 4633912
Alignment:
Q  144 ccaccaataactctttatcattt--acatttcaacaaaagcaactcaacaattattatttta 203  Q
    |||||||||||||||||||||||  || ||||||||||| |||||||||||| |||||||||    
T  4633973 ccaccaataactctttatcatttttacctttcaacaaaaacaactcaacaatgattatttta 4633912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 18379910 - 18379809
Alignment:
Q  141 gttccaccaataactctttatcatttacatttcaacaa---------aagcaactcaacaattattattttaataaaaagtggtgtg-gaatcacttaag 230  Q
    ||||||||||||||||||||||||| ||||||||||||         |||| |||||||||| |||||||| ||||||||||||||| || |||||||||    
T  18379910 gttccaccaataactctttatcattcacatttcaacaaaagccacaaaagcgactcaacaatgattatttt-ataaaaagtggtgtgagattcacttaag 18379812  T
Q  231 aat 233  Q
    |||    
T  18379811 aat 18379809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 35619055 - 35619094
Alignment:
Q  70 ccaatgcaatacttactacatttattttcttaaccagtgt 109  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  35619055 ccaatgcaatacttactacatttgttttcttaaccagtgt 35619094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 35627060 - 35627099
Alignment:
Q  70 ccaatgcaatacttactacatttattttcttaaccagtgt 109  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  35627060 ccaatgcaatacttactacatttgttttcttaaccagtgt 35627099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 27322787 - 27322729
Alignment:
Q  50 aagagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    ||||||||||| |||||||||||||||||||||||| ||||||   | |||||||||||    
T  27322787 aagagttgacagcacaagttccaatgcaatacttaccacatttgactccttaaccagtg 27322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 25627437 - 25627381
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    |||||||||||||||||| ||||  ||||||||||||||||  ||||||||| ||||    
T  25627437 gagttgacaacacaagtttcaataaaatacttactacatttgctttcttaactagtg 25627381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 27974564 - 27974608
Alignment:
Q  146 accaataactctttatcatttacatttcaacaaaagcaactcaac 190  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||    
T  27974564 accaataactctttatcatttacttttcaaccaaagcaacacaac 27974608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 28061093 - 28061137
Alignment:
Q  146 accaataactctttatcatttacatttcaacaaaagcaactcaac 190  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||    
T  28061093 accaataactctttatcatttacttttcaaccaaagcaacacaac 28061137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 1991950 - 1992000
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaa 102  Q
    ||||||||||||||||||| |||| ||||||||||| ||||  ||||||||    
T  1991950 gagttgacaacacaagttctaatgtaatacttactatatttgctttcttaa 1992000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 27974486 - 27974523
Alignment:
Q  136 aatgagttccaccaataactctttatcatttacatttc 173  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  27974486 aatgagtccaaccaataactctttatcatttacatttc 27974523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 28061015 - 28061052
Alignment:
Q  136 aatgagttccaccaataactctttatcatttacatttc 173  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  28061015 aatgagtccaaccaataactctttatcatttacatttc 28061052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 449167 - 449219
Alignment:
Q  191 aattattattttaataaaaagtggtgtggaatcacttaagaatagggtcttaa 243  Q
    ||||||||||||||||||||||| |||| |  || |||||||| |||||||||    
T  449167 aattattattttaataaaaagtgatgtgaacccatttaagaatggggtcttaa 449219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 33085399 - 33085439
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacattt 92  Q
    ||||||||| |||||||| || |||||||||||||||||||    
T  33085399 gagttgacatcacaagtttcattgcaatacttactacattt 33085439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 11703212 - 11703317
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtg 213  Q
    ||||| ||||||||||| | | ||||||  ||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||| ||||||||     
T  11703212 agaccctctaacaaaaggtctaaatgagacccaccaataactctttatcatttacattttaacaaaagtaactaaacaatgattattttattaaaaagtt 11703311  T
Q  214 gtgtgg 219  Q
    ||||||    
T  11703312 gtgtgg 11703317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 31632393 - 31632482
Alignment:
Q  145 caccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtggaat-cacttaagaat 233  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||| | |||||| || |||||||||||    
T  31632393 caccaataactctttatcatttacatttcaacaaaagcaattcaataatgattattttattaaaaaattgtgtgggatccacttaagaat 31632482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 24141427 - 24141341
Alignment:
Q  148 caataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgga-atcacttaagaat 233  Q
    |||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| |||||||| ||||||| | |||||||||||    
T  24141427 caataactctttatcatttacatttcaataaaagtaactaaacaatgattattttattaaaaagttgtgtggagaccacttaagaat 24141341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 33099582 - 33099639
Alignment:
Q  153 actctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaa 210  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33099582 actctttatcatttacatttcaacaaaaacaactcaacaatgattattttaataaaaa 33099639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 30250365 - 30250257
Alignment:
Q  148 caataactctttatcatttacattt---------caacaaaagcaactcaacaattattattttaataaaaagtggtgtg-gaatcacttaagaataggg 237  Q
    |||||||||||||||||||||||||         |||| ||| |||||||||||| ||||||||| |||||||||||||| ||  |||||||||||||||    
T  30250365 caataactctttatcatttacattttaaggaaagcaactaaaacaactcaacaatgattattttattaaaaagtggtgtgagatccacttaagaataggg 30250266  T
Q  238 tcttaaatg 246  Q
    |||||||||    
T  30250265 tcttaaatg 30250257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 344 - 213
Alignment:
Q  114 agaccttctaacaaaagattttaatgagttccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtg 213  Q
    ||||| |||| |||||| ||| ||||||  ||| |||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| ||||||||     
T  344 agaccctctagcaaaaggtttcaatgagacccaacaataactctttatcatttacatttcaataaaagtaactaaacaatgattattttattaaaaagtt 245  T
Q  214 gtgtggaat-cacttaagaata-gggtcttaa 243  Q
    ||||||  | |||||||||||| |||||||||    
T  244 gtgtggggtccacttaagaatatgggtcttaa 213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 1421921 - 1421994
Alignment:
Q  146 accaataactctttatcatttacatttcaacaaaagcaactcaacaattattattttaataaaaagtggtgtgg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| | ||||||    
T  1421921 accaataactctttatcatttacatttcaacaaaagcaactcaacaatgattaatttattaaaaaatagtgtgg 1421994  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 9799289 - 9799347
Alignment:
Q  50 aagagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    |||||||||||||||||||||||||| ||||||||| |||||||  | |||||||||||    
T  9799289 aagagttgacaacacaagttccaatgtaatacttaccacatttaactccttaaccagtg 9799347  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 39609728 - 39609785
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtgt 109  Q
    ||||||||||||||||||  ||| |||||||||  |||||| ||||||||||||||||    
T  39609728 gagttgacaacacaagttataatacaatacttataacatttgttttcttaaccagtgt 39609785  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 40995859 - 40995902
Alignment:
Q  49 gaagagttgacaacacaagttccaatgcaatacttactacattt 92  Q
    |||||||||||||||||| || ||||| ||||||||||||||||    
T  40995859 gaagagttgacaacacaaatttcaatgtaatacttactacattt 40995902  T

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Target: scaffold0092 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 4888 - 4947
Alignment:
Q  144 ccaccaataactctttatcatttacatttcaacaaaagcaactcaacaattattatttta 203  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  4888 ccaccaataactctttatcatttacaattcaacaaaaacaactcaacaatgattatttta 4947  T

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Target: scaffold0316 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 1321 - 1264
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtgt 109  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  1321 gagttgacaacacaagtaccaatgcaatacttactacatttgttttcttaagcagtgt 1264  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 14265 - 14209
Alignment:
Q  52 gagttgacaacacaagttccaatgcaatacttactacatttattttcttaaccagtg 108  Q
    ||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||||    
T  14265 gagttgacaacacaagttctaatgcaatatttactacatttgctttcttaaccagtg 14209  T

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