View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14469_low_9 (Length: 292)
Name: NF14469_low_9
Description: NF14469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14469_low_9 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 39948868 - 39949138
Alignment:
| Q |
1 |
taatagacaaaacattaacccacca--tcaccaccagttcaccacaacaaccaaacattaacccactaaatgagattggctatatgaatcaaattattgt |
98 |
Q |
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||||||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39948868 |
taatagacaaaacattaacccaccagttcaccacaa-----caacaacaaccaaacattaacccactaaatgagattggctatatgaatcaaattattgt |
39948962 |
T |
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| Q |
99 |
atcataaaccatatgttacagacagacgaatgtaataaggatataataggtaataagacagacatgttaccttcataccagaaggagtttccatgaaagt |
198 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39948963 |
atcataaaccgtatgttacagacagacgaatgtaataaggatataataggtaataagacagacatgttaccttgataccagaaggagtttccatgaaagt |
39949062 |
T |
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| Q |
199 |
aagtttgtaagtattagtacgaaaagtgtgaaaagaacaaccttggccaggtaactgaggaacaccaaggttacct |
274 |
Q |
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| T |
39949063 |
aagtttgtaagtattagtacgaaaagtgtgaaaagaacaaccttggccaggtaactgaggaacaccaaggttacct |
39949138 |
T |
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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 17224292 - 17224187
Alignment:
| Q |
165 |
ttaccttcataccagaaggagtttccatgaaagtaagtttgtaagtattagtacgaaaagtgtgaaaagaacaaccttggccaggtaactgaggaacacc |
264 |
Q |
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||||||| || ||||||||| ||||||||||| |||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||| |
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| T |
17224292 |
ttacctttattccagaaggactttccatgaaactaagtttgtatgtattagtgcgaaaactgtgaaatgaacaaccttggccaggtaactgaggtacacc |
17224193 |
T |
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| Q |
265 |
aaggtt |
270 |
Q |
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| T |
17224192 |
aaggtt |
17224187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 51422009 - 51421957
Alignment:
| Q |
42 |
acaacaaccaaacattaacccactaaatgagattggctatatgaatcaaatta |
94 |
Q |
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| T |
51422009 |
acaacaaccaagctttatcccactaagtgagattggctacatggatcaaatta |
51421957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 40618 - 40663
Alignment:
| Q |
45 |
acaaccaaacattaacccactaaatgagattggctatatgaatcaa |
90 |
Q |
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| T |
40618 |
acaaccaaacattatcccactaaatgagatcggctacatgaatcaa |
40663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 4335041 - 4334988
Alignment:
| Q |
42 |
acaacaaccaaacattaacccactaaatgagattggctatatgaatcaaattat |
95 |
Q |
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||||||||||||| ||| |||||||||||||| ||||| |||||| ||||||| |
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| T |
4335041 |
acaacaaccaaactttattccactaaatgagatcggctacatgaattaaattat |
4334988 |
T |
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