View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_12 (Length: 412)
Name: NF1446_high_12
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 24259153 - 24258898
Alignment:
| Q |
18 |
agagagaccaattccagataccaatcttgaaaggatcagatttgcgataagtacaagaagccaagttatcgattctccattgagcaagacgtggagttgt |
117 |
Q |
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| T |
24259153 |
agagagaccaattccagataccaatcttgaaaggatcagatttgcgataagtacaagaagccaagttatcgattctccattgagcaagacgtggagttgt |
24259054 |
T |
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| Q |
118 |
atcaactttgtaaagagaatcagtcattctatttggaaaggaaagtgcaactgtgatttcatggatgcaatccaatataccatccaacaaaaactctccc |
217 |
Q |
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| T |
24259053 |
atcaactttgtaaagagaatcagtcattctatttggaaaggaaagtgcaactgtgatttcatggatgcaatccaatataccatccaacaaaaactctccc |
24258954 |
T |
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| Q |
218 |
ggctttcccaggttgttgactctttcttccacaatcctcgtttctcttcatatgaa |
273 |
Q |
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| T |
24258953 |
ggctttcccaggttgttgactctttcttccacaatcctcgtttctcttcatatgaa |
24258898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 287 - 393
Target Start/End: Complemental strand, 24258872 - 24258767
Alignment:
| Q |
287 |
tgttcactaccacttcatcactatactatagtatacttttcttcttatttattacaatgatacaaatgatgnnnnnnncaatctttggtttgattgtttt |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24258872 |
tgttcactaccacttcatcactatactatagtatacttttcttcttatttattacaatgatacaaatgatg-ttttttcaatctttggtttgattgtttt |
24258774 |
T |
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| Q |
387 |
gtaatat |
393 |
Q |
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| T |
24258773 |
gtaatat |
24258767 |
T |
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