View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1446_high_13 (Length: 398)

Name: NF1446_high_13
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1446_high_13
NF1446_high_13
[»] chr4 (6 HSPs)
chr4 (11-355)||(3311902-3312254)
chr4 (151-354)||(45837654-45837857)
chr4 (116-355)||(49947016-49947256)
chr4 (230-355)||(37941432-37941557)
chr4 (280-363)||(25040348-25040431)
chr4 (283-355)||(12813983-12814055)
[»] scaffold0548 (1 HSPs)
scaffold0548 (109-355)||(9809-10056)
[»] chr3 (7 HSPs)
chr3 (109-355)||(15102948-15103195)
chr3 (97-355)||(13371772-13372031)
chr3 (229-358)||(20129438-20129567)
chr3 (112-319)||(52613054-52613262)
chr3 (227-356)||(15097310-15097439)
chr3 (150-281)||(19911136-19911267)
chr3 (283-354)||(27356629-27356700)
[»] chr5 (10 HSPs)
chr5 (103-355)||(17943064-17943317)
chr5 (116-358)||(32664371-32664614)
chr5 (116-355)||(17009780-17010020)
chr5 (97-355)||(20027662-20027922)
chr5 (229-355)||(8376066-8376192)
chr5 (239-349)||(8376231-8376341)
chr5 (230-357)||(36516940-36517067)
chr5 (132-357)||(14481690-14481914)
chr5 (260-356)||(31308780-31308876)
chr5 (283-319)||(10497240-10497276)
[»] chr7 (10 HSPs)
chr7 (97-356)||(23925615-23925875)
chr7 (97-355)||(22938857-22939116)
chr7 (116-355)||(24501542-24501782)
chr7 (127-356)||(27288944-27289173)
chr7 (231-356)||(21740320-21740443)
chr7 (99-356)||(11512900-11513171)
chr7 (99-356)||(11506177-11506448)
chr7 (293-356)||(14154132-14154195)
chr7 (115-201)||(21739197-21739284)
chr7 (283-355)||(20571462-20571534)
[»] chr1 (3 HSPs)
chr1 (110-354)||(36478701-36478946)
chr1 (97-354)||(17176038-17176296)
chr1 (270-353)||(41944033-41944116)
[»] scaffold0089 (1 HSPs)
scaffold0089 (97-356)||(32775-33035)
[»] chr6 (6 HSPs)
chr6 (97-358)||(22474362-22474623)
chr6 (116-357)||(16729581-16729823)
chr6 (246-357)||(33292415-33292526)
chr6 (229-354)||(20511834-20511959)
chr6 (283-356)||(28247598-28247671)
chr6 (265-352)||(14267287-14267374)
[»] chr8 (6 HSPs)
chr8 (134-355)||(6813846-6814065)
chr8 (243-358)||(16230243-16230358)
chr8 (132-355)||(25043130-25043353)
chr8 (260-357)||(4685745-4685842)
chr8 (294-353)||(14128592-14128651)
chr8 (127-203)||(16232355-16232431)
[»] chr2 (4 HSPs)
chr2 (127-355)||(12630062-12630289)
chr2 (132-357)||(33736946-33737171)
chr2 (127-358)||(22197913-22198142)
chr2 (260-355)||(5562545-5562640)
[»] scaffold0038 (1 HSPs)
scaffold0038 (283-356)||(47760-47833)
[»] scaffold0665 (1 HSPs)
scaffold0665 (294-353)||(2794-2853)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 3312254 - 3311902
Alignment:
Q  11 cagagaagaggttttgtgagtgaatgagtgggtttggtgagaaaagtgttttgtgcgtgatgaaatcttatctgccnnnnnnnnnn-------attttca 103  Q
    |||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||                 |||||||    
T  3312254 cagagaagagtttttgtcagtgaatgagtgggtttggtgagagaagtgttttgtgcgtgatgaaatcttatctgcctttttttttatttttttattttca 3312155  T
Q  104 taaagccaaacaatagcgtttgtaaaagcgctatctataccccctccaactatagcgtttt-ctgaaaagcgctattaatgtgaaccaaaacaatagcgc 202  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||    
T  3312154 taaagccaaacaatagcgtttgtaaaaacgctatctataccccctccaactatagcgtttttctgaaaagcgctattagtgtgaaccaaaataatagcgc 3312055  T
Q  203 ttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatt 302  Q
    ||||| |||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  3312054 ttgcagaagagcgccatctagtccaattttaaacaagtttttcttagcactttctgtaaagcgctataacaggtctatgggttgcatttttaatagcgtt 3311955  T
Q  303 tatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  3311954 tatccagatgcgctattgaaattgtgctattaaaagccaaaattgtggtagtg 3311902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 151 - 354
Target Start/End: Complemental strand, 45837857 - 45837654
Alignment:
Q  151 aactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagc 250  Q
    |||||||| ||||| ||||||||||||||| |||| ||||||| || || | ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  45837857 aactatagtgttttttgaaaagcgctattagtgtgcaccaaaataacagtgtttgcagaagagcgctatctagtccaatttttaacaagtttttcttagc 45837758  T
Q  251 gctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtgg 350  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  45837757 gctttctgaaaagtgctataacacgtctatgggttgcatttttaatagcatttatccagaagggctattaaaattgtgctattaaaagccaaaattgtgg 45837658  T
Q  351 tagt 354  Q
    ||||    
T  45837657 tagt 45837654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 116 - 355
Target Start/End: Original strand, 49947016 - 49947256
Alignment:
Q  116 atagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagc 214  Q
    ||||||||||| |||| ||||||||||||||||| |||| |||||||||||| ||||||||||||| |  |||| | || ||||||||||  | || |||    
T  49947016 atagcgtttgtgaaaaacgctatctatacccccttcaacaatagcgttttcttaaaagcgctattagtacgaacaagaataatagcgcttatagaaaagc 49947115  T
Q  215 gctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacg 314  Q
    |||||| |  ||| ||||| ||||| |||| ||||||||||||| | |||| ||||||||||||||   ||||||||||||||||||||||| | |||||    
T  49947116 gctatctaacccagtttttcacaagctttttttagcgctttctgaagagtgttataacaggtctataatttgcatttttaatagcatttatctaaaaacg 49947215  T
Q  315 ctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  49947216 ctattaaaattgtgctattaaaagacaaaattgtggtagtg 49947256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 230 - 355
Target Start/End: Complemental strand, 37941557 - 37941432
Alignment:
Q  230 ttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgc 329  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||    
T  37941557 ttttaacatgtttttcttagctctttctgtaaagtgctataacaggtttatgagttgcatttttaatagcatttatccagaaacgctattaaaattatgc 37941458  T
Q  330 tattaaaagccaaaattgtggtagtg 355  Q
    |||||||||||||||||||| |||||    
T  37941457 tattaaaagccaaaattgtgatagtg 37941432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 25040348 - 25040431
Alignment:
Q  280 tgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtgaattattt 363  Q
    |||||||  ||||||||||| |||||||| ||| |||||| |||||| |||||||||| |||||||||| ||||||||| ||||    
T  25040348 tgggttgtgtttttaatagcgtttatccataaaagctattaaaattgcgctattaaaaaccaaaattgtagtagtgaataattt 25040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 12814055 - 12813983
Alignment:
Q  283 gttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    ||||| |||||||||||||||||  | ||||||||||  | ||| ||||||||||||||||||||||||||||    
T  12814055 gttgcctttttaatagcatttatataaaaacgctattatacttgcgctattaaaagccaaaattgtggtagtg 12813983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 109 - 355
Target Start/End: Complemental strand, 10056 - 9809
Alignment:
Q  109 ccaaacaatagcgtttgtaa-aagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgca 207  Q
    |||||||||||||||||| | || |||||||||||||||||  ||| ||||||||| |||||||||||||||| ||  |||||||||||||||| ||       
T  10056 ccaaacaatagcgtttgtgagaaacgctatctataccccctttaacaatagcgtttcctgaaaagcgctattagtgcaaaccaaaacaatagcgtttatg 9957  T
Q  208 aaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatcc 307  Q
    ||| ||||||||| |  | | |||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  9956 aaaaagcgctatctaacctagtttttatcatgtttttcttagcgctttctgtaaagtgctataacaggtttatgagttgcatttttaatagcatttatcc 9857  T
Q  308 agaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9856 agaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtg 9809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 109 - 355
Target Start/End: Original strand, 15102948 - 15103195
Alignment:
Q  109 ccaaacaatagcgtttgtaa-aagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgca 207  Q
    |||||||||||||||||| | || |||||||||||||||||  ||| ||||||||| |||||||||||||||| ||  |||||||||||||||| ||       
T  15102948 ccaaacaatagcgtttgtgagaaacgctatctataccccctttaacaatagcgtttcctgaaaagcgctattagtgcaaaccaaaacaatagcgtttatg 15103047  T
Q  208 aaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatcc 307  Q
    ||| ||||||||| |  | | |||||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  15103048 aaaaagcgctatctaacctagtttttatcatgtttttcttagcgctttctgtaaagtgctataacaggtttatgagttgcatttttaatagcatttatcc 15103147  T
Q  308 agaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  15103148 agaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtg 15103195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 355
Target Start/End: Original strand, 13371772 - 13372031
Alignment:
Q  97 attttcataaag-ccaaacaatagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaac 194  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| | |  ||||||||||||| ||  ||||||||     
T  13371772 attttcataaaggccaaaca-tagcgtttgtgaaaagcgctatctataccccctccaacaatagcgtctgcaaaaaagcgctattagtgcaaaccaaaat 13371870  T
Q  195 aatagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcattttta 294  Q
    ||||||  ||  | || ||||||||| |  ||| ||||||||| |||||||||||||||||||| |||  ||||||||||||| ||  ||||||||||||    
T  13371871 aatagcttttatagaaaagcgctatctaacccagtttttaacatgtttttcttagcgctttctgaaaaccgctataacaggtccataagttgcattttta 13371970  T
Q  295 atagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    ||||| ||||| || || ||||||| ||||| ||||||||||| |||||||||||||||||    
T  13371971 atagcgtttattcaaaagcgctattaaaattatgctattaaaaaccaaaattgtggtagtg 13372031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 358
Target Start/End: Complemental strand, 20129567 - 20129438
Alignment:
Q  229 tttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtg 328  Q
    ||||| |||||||||| ||| ||||||||| | |||||||||||||||||||   ||||||||||||||||||||||| | ||| |||||| ||||||||    
T  20129567 ttttttacaagttttttttaacgctttctgaagagtgctataacaggtctataatttgcatttttaatagcatttatctataaaagctattaaaattgtg 20129468  T
Q  329 ctattaaaagccaaaattgtggtagtgaat 358  Q
    |||||||||||||||||| |||||||||||    
T  20129467 ctattaaaagccaaaattatggtagtgaat 20129438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 319
Target Start/End: Complemental strand, 52613262 - 52613054
Alignment:
Q  112 aacaatagcgtttgtaaaagcgctatctatac-cccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaa 210  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||| |  |||||||||||   || ||| | ||| |||| || || |  ||    
T  52613262 aacaatagcgtttctaaaagtgctatctatacacccctccaacaatagcatttaccaaaaagcgctatctttgagaaacgaaataatatcgtttaccgaa 52613163  T
Q  211 gagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccaga 310  Q
     ||||||||| |  | | ||||||||  |||||||||||||||||||  ||||||||||||||||||| | ||| ||||||| |||||||||||||||||    
T  52613162 aagcgctatctaacctagtttttaacgtgtttttcttagcgctttctaaaaagtgctataacaggtctctcggtggcattttcaatagcatttatccaga 52613063  T
Q  311 aacgctatt 319  Q
    | |||||||    
T  52613062 agcgctatt 52613054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 15097310 - 15097439
Alignment:
Q  227 aatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattg 326  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||||| ||| ||||| || |||| ||||||||||||||| ||  || ||| || ||     
T  15097310 aatttttaacatgtttttcttagccctttctaaaaagtgctataacagatctgtgggtggcgttttcaatagcatttatccataagagccattaaactta 15097409  T
Q  327 tgctattaaaagccaaaattgtggtagtga 356  Q
    ||||||||||| ||||||||||| ||||||    
T  15097410 tgctattaaaaaccaaaattgtgatagtga 15097439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 19911136 - 19911267
Alignment:
Q  150 caactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttag 249  Q
    |||| |||||||||||| ||||||||||||| | ||||||| || ||||||||||  | || |||| |||| |  |||||||||||||||||||| ||||    
T  19911136 caacaatagcgttttctaaaaagcgctattagtatgaaccagaataatagcgcttatacaaaagcgttatctaacccaatttttaacaagttttttttag 19911235  T
Q  250 cgctttctgtaaagtgctataacaggtctatg 281  Q
    ||  || || |||||||| ||||| |||||||    
T  19911236 cgtattatgaaaagtgctctaacatgtctatg 19911267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 27356629 - 27356700
Alignment:
Q  283 gttgcatttttaatagcatttatccaga-aacgctattgaaattgtgctattaaaagccaaaattgtggtagt 354  Q
    ||||||||||||||||| ||| || ||| ||||||||| || | ||||||||||||| ||||||||| |||||    
T  27356629 gttgcatttttaatagcgttt-tcgagataacgctattaaagtggtgctattaaaagacaaaattgtagtagt 27356700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 103 - 355
Target Start/End: Original strand, 17943064 - 17943317
Alignment:
Q  103 ataaagccaaacaatagcgtttgtaa-aagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcg 201  Q
    |||||||| ||  ||||||||||| | ||||||||||||||||||||||||| |||||||||    |||||||||||||||| |||| | || |||||||    
T  17943064 ataaagcccaaacatagcgtttgtgacaagcgctatctataccccctccaacaatagcgtttcggaaaaagcgctattaatgcgaacaataataatagcg 17943163  T
Q  202 cttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcat 301  Q
     ||    || ||||||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  17943164 tttcaggaaaagcgctatctaatccaatttttaacaagttttccttagcgctttctgaaaagtgctataacaggtctatgagttgcatttttaatagcat 17943263  T
Q  302 ttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  17943264 ttatccagaaacgctattaaaataatgctattaaaagccaaaattgtggtagtg 17943317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 116 - 358
Target Start/End: Complemental strand, 32664614 - 32664371
Alignment:
Q  116 atagcgtttgtaa-aagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagc 214  Q
    ||||||||||| | ||||||||||||||||||||||||| |||| ||||    ||||||||||||||||  ||| | || ||||||| ||    || |||    
T  32664614 atagcgtttgtgacaagcgctatctataccccctccaacaatagtgtttcggaaaaagcgctattaatgcaaacaataataatagcgtttcaggaaaagc 32664515  T
Q  215 gctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacg 314  Q
    |||||| |  ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  32664514 gctatctaacccaatttttaacaagttttccttagcgctttctgaaaagtgctataacaggtttatgagttgcatttttaatagcatttatccagaaacg 32664415  T
Q  315 ctattgaaattgtgctattaaaagccaaaattgtggtagtgaat 358  Q
    ||||| ||||  ||||||||||||||||||||||||||||||||    
T  32664414 ctattaaaataatgctattaaaagccaaaattgtggtagtgaat 32664371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 116 - 355
Target Start/End: Original strand, 17009780 - 17010020
Alignment:
Q  116 atagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagc 214  Q
    ||||||||||| |||| ||||||||||||||||| |||| |||||| ||| | ||||| ||||||| |  |||| | || |||||| |||  | || |||    
T  17009780 atagcgtttgtgaaaaacgctatctatacccccttcaacaatagcgcttttttaaaagtgctattagtacgaacaagaataatagcacttatagaaaagc 17009879  T
Q  215 gctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacg 314  Q
    |||||| |  ||| ||||||||||| |||| ||||||||||||| | |||||||||||||||||||   ||||||||||||||||||||||||| |||||    
T  17009880 gctatctaacccagtttttaacaagctttttttagcgctttctgaagagtgctataacaggtctataatttgcatttttaatagcatttatccaaaaacg 17009979  T
Q  315 ctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  17009980 ctattaaaattgtgctattaaaagccaaaattgtggtagtg 17010020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 97 - 355
Target Start/End: Complemental strand, 20027922 - 20027662
Alignment:
Q  97 attttcataaag-ccaaacaatagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaac 194  Q
    |||||||||||| ||||||| || ||||||| ||||||||||||||||||||||||||| |||||| || |  ||||||||||||| ||  ||||||||     
T  20027922 attttcataaaggccaaaca-taacgtttgtgaaaagcgctatctataccccctccaacaatagcgcttgcaaaaaagcgctattagtgcaaaccaaaat 20027824  T
Q  195 aatagcgcttgcaaaagagcgctatccagtccaattttt-aacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcattttt 293  Q
    ||||||||||  |||| ||||||||| |  ||| ||||| |||| ||||||||| ||||||| || |||  ||| ||||||| ||||  |||||||||||    
T  20027823 aatagcgcttataaaaaagcgctatctaacccagttttttaacatgtttttcttggcgctttttgaaaacagctttaacaggactataagttgcattttt 20027724  T
Q  294 aatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    |||||||||||| || |||||||||| |||||  ||||||||||||||||||||||||||||    
T  20027723 aatagcatttattcaaaaacgctattaaaattacgctattaaaagccaaaattgtggtagtg 20027662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 229 - 355
Target Start/End: Complemental strand, 8376192 - 8376066
Alignment:
Q  229 tttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtg 328  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||| || |||||||||| ||||||||    
T  8376192 tttttaacatgtttttcttagcgctttctgaaaagtgctataacaggtctataagttgcatttttaatagcatttattcaaaaacgctattaaaattgtg 8376093  T
Q  329 ctattaaaagccaaaattgtggtagtg 355  Q
    ||||||||| |||||||||||||||||    
T  8376092 ctattaaaatccaaaattgtggtagtg 8376066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 8376231 - 8376341
Alignment:
Q  239 gtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaag 338  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| || |||||||||||||||    
T  8376231 gtttttcttagcgctttctgaaaagtgctataacaggtctatgggttgcattttcaatagcatttatctagaagcgctattaaacttgtgctattaaaag 8376330  T
Q  339 ccaaaattgtg 349  Q
    |||| ||||||    
T  8376331 ccaatattgtg 8376341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 230 - 357
Target Start/End: Complemental strand, 36517067 - 36516940
Alignment:
Q  230 ttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgc 329  Q
    ||||||||| |||||||||||||||| |  |||||||||||||||||||||| ||||| |||||||||||||||||||| ||  |||||| |||||||||    
T  36517067 ttttaacaaatttttcttagcgcttttttgaaagtgctataacaggtctatgagttgcctttttaatagcatttatccataagtgctattaaaattgtgc 36516968  T
Q  330 tattaaaagccaaaattgtggtagtgaa 357  Q
    ||||||| ||||||||||| ||||||||    
T  36516967 tattaaaggccaaaattgtagtagtgaa 36516940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 132 - 357
Target Start/End: Complemental strand, 14481914 - 14481690
Alignment:
Q  132 cgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtccaattt 231  Q
    ||||||||||||||||  |||| | ||||||| |  |||||  |||||| ||||||| | || ||| ||||||  | || ||||||||| |  ||| |||    
T  14481914 cgctatctatacccccctcaacaacagcgtttccctaaaagtactattagtgtgaacaagaataatggcgcttatagaaaagcgctatctaacccagttt 14481815  T
Q  232 ttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgcta 331  Q
    || |||| ||||| ||||||||||||| | |||||||||| ||||||||   ||| |||||||||||| |||||  | |||||||||| |||||||||||    
T  14481814 tttacaatttttt-ttagcgctttctgcagagtgctataataggtctataatttgtatttttaatagcttttatgtacaaacgctattaaaattgtgcta 14481716  T
Q  332 ttaaaagccaaaattgtggtagtgaa 357  Q
    ||||| ||||||||||||||| ||||    
T  14481715 ttaaaggccaaaattgtggtaatgaa 14481690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 356
Target Start/End: Complemental strand, 31308876 - 31308780
Alignment:
Q  260 aaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtga 356  Q
    |||||||||||  |||| | || ||||| |||| |||||| |||||  | |||||||||| || ||| ||||||||||||||||||||| |||||||    
T  31308876 aaagtgctatagaaggtatctgtgttgccttttcaatagcgtttatgtaaaaacgctattaaatttgcgctattaaaagccaaaattgtagtagtga 31308780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 10497276 - 10497240
Alignment:
Q  283 gttgcatttttaatagcatttatccagaaacgctatt 319  Q
    |||||||||||||||||||||||||| || |||||||    
T  10497276 gttgcatttttaatagcatttatccataagcgctatt 10497240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 97 - 356
Target Start/End: Original strand, 23925615 - 23925875
Alignment:
Q  97 attttcataaagc-caaacaatagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaac 194  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||||||||||  |||| |||||||||||| ||||| ||||||| ||||||| | ||     
T  23925615 attttcataaagcacaaaca-tagcgtttgtgaaaagcgctatctatacccccatcaacaatagcgttttctaaaaagtgctattagtgtgaactagaat 23925713  T
Q  195 aatagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcattttta 294  Q
    ||||||||||  | || ||||||||| |  ||| |||||||||| |||||||||||||||| ||||||| | |||||||||||||||  ||||||||||     
T  23925714 aatagcgcttatacaaaagcgctatctaacccagtttttaacaaatttttcttagcgctttatgtaaagcgttataacaggtctatgatttgcatttttc 23925813  T
Q  295 atagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtga 356  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  23925814 atagcatttatccataaacgctattaaaattgtgctattaaaagccaaaattgtggtagtga 23925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 97 - 355
Target Start/End: Complemental strand, 22939116 - 22938857
Alignment:
Q  97 attttcataaagccaaacaatagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaaca 195  Q
    |||||||||||||  ||  ||||||||||  ||||||||||||||||||||||||||| ||||||||| ||  ||| |||||||| ||  ||| |||  |    
T  22939116 attttcataaagcacaaagatagcgtttgagaaaagcgctatctataccccctccaacaatagcgtttgctagaaaacgctattagtgccaacaaaacta 22939017  T
Q  196 atagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaa 295  Q
    |||||||| ||  || ||||||||| |  ||| |||| || |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  22939016 atagcgctcgccgaaaagcgctatctaacccatttttcaaaaagtttttcttagcgctttctgcaaagtgctataacaggcctatgggttgcatttttaa 22938917  T
Q  296 tagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    |||| |||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||    
T  22938916 tagcgtttatccaaaaatgctattaaaattgtgctattaaaagcccaaattgtggtagtg 22938857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 116 - 355
Target Start/End: Original strand, 24501542 - 24501782
Alignment:
Q  116 atagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagc 214  Q
    ||||||||||| |||| ||||||||||||||||| |||| |||||||||||| ||||||||||||| |  |||| | || |||||| |||  | || |||    
T  24501542 atagcgtttgtgaaaaacgctatctatacccccttcaacaatagcgttttcttaaaagcgctattagtacgaacaagaataatagcacttatagaaaagc 24501641  T
Q  215 gctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacg 314  Q
    |||||| |  ||| ||||||||||| |||| |||||| |||||| |  ||||||||||||||||||   ||||||||||||||||||||||||| |||||    
T  24501642 gctatctaacccagtttttaacaagctttttttagcgttttctgaagggtgctataacaggtctataatttgcatttttaatagcatttatccaaaaacg 24501741  T
Q  315 ctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  24501742 ctattaaaattgtgctattaaaagccaaaattgtggtagtg 24501782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 127 - 356
Target Start/End: Original strand, 27288944 - 27289173
Alignment:
Q  127 aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtcc 226  Q
    |||| |||||||||||||| ||||||| ||||||||| ||  |||  ||||||| ||  ||| |||  ||||||||| ||  || ||||||||| |  ||    
T  27288944 aaaaacgctatctataccctctccaacaatagcgtttgctagaaaatgctattagtgcaaacaaaactaatagcgctcgccgaaaagcgctatctaaccc 27289043  T
Q  227 aatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattg 326  Q
    | ||||||| ||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||||||||||||||| ||| | |||| ||||||    
T  27289044 attttttaaaaagtttttcttagcgctttttgcaaagtgctataacaggcctatggattgcatttttaatagcatttatccaaaaatgttattaaaattg 27289143  T
Q  327 tgctattaaaagccaaaattgtggtagtga 356  Q
    ||||||||||||||||||||||||||||||    
T  27289144 tgctattaaaagccaaaattgtggtagtga 27289173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 356
Target Start/End: Original strand, 21740320 - 21740443
Alignment:
Q  231 tttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgct 330  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||||||   ||||||||||||||||| |||| || ||| |||||| ||||  ||||    
T  21740320 tttaacatgtttttcttaacgctttctgaaaagtgctataacaggtctataaattgcatttttaatagcagttattcaaaaatgctattaaaat--tgct 21740417  T
Q  331 attaaaagccaaaattgtggtagtga 356  Q
    ||||||||||||||||||| ||||||    
T  21740418 attaaaagccaaaattgtgatagtga 21740443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 356
Target Start/End: Original strand, 11512900 - 11513171
Alignment:
Q  99 tttcataaagcca-aacaatagcgtttgt--aaaagcgctatctataccc--cctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaa 193  Q
    ||||||||||||| |||||||| ||||||  |||| | |||| |||||||  |||||||| ||||||||| ||||||||||||||||||| | ||||||     
T  11512900 tttcataaagccagaacaatagtgtttgtgtaaaaacactatttataccctccctccaacaatagcgtttcctgaaaagcgctattaatgagtaccaaat 11512999  T
Q  194 caatagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgcta----------taacaggtctatggg 283  Q
     ||||| | ||| | || ||  | ||| |  ||| ||||||||| |||||||||||||||||||  |||||||||          ||||| ||||||| |    
T  11513000 -aatagggtttgtagaaaagtaccatctaacccagtttttaacatgtttttcttagcgctttctaaaaagtgctaaaaagtgttataacatgtctatgcg 11513098  T
Q  284 ttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtga 356  Q
    ||||||||||||||| ||||||| |||| | ||||| ||||| ||||||| |||   ||||||||||||||||    
T  11513099 ttgcatttttaatagtatttatctagaagctctattaaaattctgctattgaaatttaaaattgtggtagtga 11513171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 356
Target Start/End: Original strand, 11506177 - 11506448
Alignment:
Q  99 tttcataaagcca-aacaatagcgtttgt--aaaagcgctatctataccc--cctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaa 193  Q
    ||||||||||||| |||||||||||||||  |||| | |||| |||||||  |||||||| ||||||||| ||||||||||||||||||| | ||||||     
T  11506177 tttcataaagccagaacaatagcgtttgtgtaaaaacactatttataccctccctccaacaatagcgtttcctgaaaagcgctattaatgagtaccaaat 11506276  T
Q  194 caatagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttct-----gt-----aaagtgctataacaggtctatggg 283  Q
     ||||| | ||| | || ||  | ||| |  | | ||||||||| |||||||||||||||||||     ||     |||||| ||||||| ||||||| |    
T  11506277 -aatagggtttgtagaaaagtaccatctaacctagtttttaacatgtttttcttagcgctttctaaaaagtcctaaaaagtgttataacatgtctatgcg 11506375  T
Q  284 ttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtga 356  Q
    ||||||||||||||| ||||||| |||| | ||||| ||||| ||||||| |||   ||||||||||||||||    
T  11506376 ttgcatttttaatagtatttatctagaagctctattaaaattctgctattgaaatttaaaattgtggtagtga 11506448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 14154132 - 14154195
Alignment:
Q  293 taatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtga 356  Q
    ||||||| |||||  |||||||||||| ||||  |||||| |||||||||||||||||||||||    
T  14154132 taatagcgtttatgtagaaacgctattaaaatactgctataaaaagccaaaattgtggtagtga 14154195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 21739197 - 21739284
Alignment:
Q  115 aatagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcg 201  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||||||| |  ||| ||| ||||| ||  |||||||| |||||||    
T  21739197 aatagcgtttgtgaaaagagctatctataccccctccaacaatagcgtttacaaaaaggcgatattagtgcaaaccaaaataatagcg 21739284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 20571534 - 20571462
Alignment:
Q  283 gttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    ||||| ||| ||||||| |||||  | |||||||||| ||||  |||||| ||||||||||||||| ||||||    
T  20571534 gttgcctttataatagcgtttatgtaaaaacgctattaaaatactgctataaaaagccaaaattgtagtagtg 20571462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 110 - 354
Target Start/End: Complemental strand, 36478946 - 36478701
Alignment:
Q  110 caaacaatagcgttt-gtaaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaa 208  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| || ||||||||| ||||||| || |||    
T  36478946 caaacaatagcgtttcgtaaaaacgctatctataccccctccaacaatagcgttttctaaaaagcgctattagtgcgaaccaaaataatagcgtttacaa 36478847  T
Q  209 aagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatcca 308  Q
    || |  |||||| |  ||| ||||||||| || ||| ||||||||||||| |||||||||||| || |||||| ||||||| ||||||||||||||||||    
T  36478846 aaaaatgctatctaacccagtttttaacatgtcttttttagcgctttctgaaaagtgctataatagatctatgagttgcatctttaatagcatttatcca 36478747  T
Q  309 gaaacgctattgaaattgtgctattaaaagccaaaattgtggtagt 354  Q
     ||| ||| || ||||| ||||||||||||||||||||||||||||    
T  36478746 taaaagctgttaaaattatgctattaaaagccaaaattgtggtagt 36478701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 97 - 354
Target Start/End: Complemental strand, 17176296 - 17176038
Alignment:
Q  97 attttcataaagccaaacaatagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaa-gcgctattaatgtgaaccaaaac 194  Q
    ||||| |||||||| ||  ||||||||||| |||||||||||||||||||| |||||| ||||| ||||| ||||| ||| ||||| ||  ||| | ||     
T  17176296 attttaataaagcccaaacatagcgtttgtgaaaagcgctatctataccccttccaacaatagc-ttttcggaaaaagcgttattagtgcaaacaacaat 17176198  T
Q  195 aatagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcattttta 294  Q
    ||||||  ||     | ||||||||| |  ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||    
T  17176197 aatagcatttatgggaaagcgctatctaacccaatttttaacaagttttccttagcgctttctgaaaagtgctataataggtctatgagttgcattttta 17176098  T
Q  295 atagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagt 354  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  17176097 atagcatttatccagaaacgctattaaaattatgctattaaaagccaaaattgtggtagt 17176038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 41944116 - 41944033
Alignment:
Q  270 aacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtag 353  Q
    |||||||||||| ||||| | ||||||||||||||| || ||||| |||| ||||||||||||||||||| |||||||||||||    
T  41944116 aacaggtctatgagttgcctatttaatagcatttattcataaacgttattaaaattgtgctattaaaagctaaaattgtggtag 41944033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 97 - 356
Target Start/End: Complemental strand, 33035 - 32775
Alignment:
Q  97 attttcataaag-ccaaacaatagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaac 194  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| | |  ||||||||||||| ||  ||||||||     
T  33035 attttcataaaggccaaaca-tagcgtttgtgaaaagcgctatctataccccctccaacaatagcgtctgcaaaaaagcgctattagtgcaaaccaaaat 32937  T
Q  195 aatagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcattttta 294  Q
    ||||||| ||  | || ||||||||| |  ||| ||||||||| |||||||||||||||||||| |||  |||||||||| |||||  ||||||||||||    
T  32936 aatagcgtttatagaaaagcgctatctaacccagtttttaacatgtttttcttagcgctttctgaaaaccgctataacagatctataagttgcattttta 32837  T
Q  295 atagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtga 356  Q
    ||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  32836 atagcatttattcaaaaacgctattaaaattatgctattaaaagccaaaattgtggtagtga 32775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 97 - 358
Target Start/End: Original strand, 22474362 - 22474623
Alignment:
Q  97 attttcataaagccaaacaatagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaaca 195  Q
    |||||||| ||||| ||| ||||||||||  |||| |||||||||||||||||| ||| |||| |||| |  ||||||||||||| || |||| | || |    
T  22474362 attttcattaagcccaaccatagcgtttgagaaaaacgctatctataccccctc-aacaatagtgtttccccaaaagcgctattagtgcgaacaagaata 22474460  T
Q  196 atagcgcttgcaaaagagcgctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaa 295  Q
    |||||||||  | || ||||||||| |  ||||||||| |||||||||| ||||||||||||| | |||||||||| ||||||||   || |||||||||    
T  22474461 atagcgcttatagaaaagcgctatctaacccaattttttacaagttttttttagcgctttctgcagagtgctataataggtctataatttacatttttaa 22474560  T
Q  296 tagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtgaat 358  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22474561 tagcttttatgcagaaacgctattaaaattgtgctattaaaagccaaaattgtggtagtgaat 22474623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 116 - 357
Target Start/End: Original strand, 16729581 - 16729823
Alignment:
Q  116 atagcgtttgt-aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagc 214  Q
    ||||||||||| |||| ||||||||||||||||| |||| |||| ||||||| ||||||||||||| |  |||| | || |||| | |||  | || |||    
T  16729581 atagcgtttgtgaaaaacgctatctatacccccttcaacaatagtgttttcttaaaagcgctattagtacgaacaagaataatatcacttatagaaaagc 16729680  T
Q  215 gctatccagtccaatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacg 314  Q
    |||||  |  ||| ||||| ||||| |||| ||||||||||||| | |||||||||||||||||||   |||||||||||||||| |||||||| |||||    
T  16729681 gctatgtaacccagtttttcacaagctttttttagcgctttctgaagagtgctataacaggtctataatttgcatttttaatagcttttatccaaaaacg 16729780  T
Q  315 ctattgaaattgtgctattaaaagccaaaattgtggtagtgaa 357  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  16729781 ctattaaaattgtgctattaaaagccaaaattgtggtagtgaa 16729823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 33292415 - 33292526
Alignment:
Q  246 ttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaat 345  Q
    ||||||||||||| | ||||||||||||| |||||   ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  33292415 ttagcgctttctgaagagtgctataacagatctataatttgcatttttaatagcatttatccaaaaacgctattaaaattgtgctattaaaagccaaaat 33292514  T
Q  346 tgtggtagtgaa 357  Q
    ||||||||||||    
T  33292515 tgtggtagtgaa 33292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 354
Target Start/End: Complemental strand, 20511959 - 20511834
Alignment:
Q  229 tttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtg 328  Q
    ||||||||| ||||||||||| |||||||| |||  ||||||||||||||||  ||||||||||||||||||||||| || |||||||||| ||||| ||    
T  20511959 tttttaacatgtttttcttagtgctttctgaaaaccgctataacaggtctataagttgcatttttaatagcatttattcaaaaacgctattaaaattatg 20511860  T
Q  329 ctattaaaagccaaaattgtggtagt 354  Q
    ||||||||||||||||||||| ||||    
T  20511859 ctattaaaagccaaaattgtgttagt 20511834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 28247671 - 28247598
Alignment:
Q  283 gttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtga 356  Q
    ||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||| |||||||| |||||||    
T  28247671 gttgcctttttaatagcatttatatagaaacgctattaaaattgtgctattaaaagctaaaattgtagtagtga 28247598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 14267374 - 14267287
Alignment:
Q  265 gctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggta 352  Q
    |||||||||||||  |||| ||  |||  |||||| |||||  ||||| |||||| |||||||||||||||||||||||||| |||||    
T  14267374 gctataacaggtcagtgggatgtctttacaatagcttttatggagaaaagctattaaaattgtgctattaaaagccaaaattatggta 14267287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 134 - 355
Target Start/End: Complemental strand, 6814065 - 6813846
Alignment:
Q  134 ctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtccaattttt 233  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||| |  ||||||||| ||||| | ||  |  | ||||||||| |  |||||||||    
T  6814065 ctatctataccccc-ccaacaatagcgttt-ctgaaaagcgctattagtccgaaccaaaataatagtgtttataggaaagcgctatctaacccaattttt 6813968  T
Q  234 aacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctatt 333  Q
    |||| |||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||| ||||||    
T  6813967 aacatgtttttcttagcgctttctgaaaagcgctataacaggcctatgagttgcatttttaatagcttttatccataaacgctattaaaattgcgctatt 6813868  T
Q  334 aaaagccaaaattgtggtagtg 355  Q
    ||||||||||||||||||||||    
T  6813867 aaaagccaaaattgtggtagtg 6813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 16230358 - 16230243
Alignment:
Q  243 ttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaa 342  Q
    ||||| |||||||||| |||||||||||||||| || || |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  16230358 ttcttggcgctttctgcaaagtgctataacaggcctgtgagttgcatttttaatagcatttatctagaaacgctattaaaattgtgctattaaaagccaa 16230259  T
Q  343 aattgtggtagtgaat 358  Q
    ||||||||||||||||    
T  16230258 aattgtggtagtgaat 16230243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 355
Target Start/End: Original strand, 25043130 - 25043353
Alignment:
Q  132 cgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtccaattt 231  Q
    ||||||||||||||||   ||| ||||||||| |  ||||||||||||| ||||||| | || ||||||||||  | || ||||||||| |  |||   |    
T  25043130 cgctatctatacccccctaaacaatagcgtttccctaaaagcgctattagtgtgaacaagaataatagcgcttaaagaaaagcgctatctaacccagggt 25043229  T
Q  232 ttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgcta 331  Q
    || |||||||||| |||||||||||||   |||||||||| || |||||   |||||||| ||||||| |||||  |||||||||||| || ||||||||    
T  25043230 tttacaagttttttttagcgctttctgcggagtgctataatagatctataatttgcatttgtaatagcgtttatgtagaaacgctattaaatttgtgcta 25043329  T
Q  332 ttaaaagccaaaattgtggtagtg 355  Q
    |||||  |||||||||||||||||    
T  25043330 ttaaagaccaaaattgtggtagtg 25043353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 4685745 - 4685842
Alignment:
Q  260 aaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtgaa 357  Q
    |||| ||||||||| |||| ||  || ||||||||| ||| |||||   ||||||||||| || ||| |||||||||| |||||||||| ||||||||    
T  4685745 aaagagctataacatgtctgtgttttacatttttaacagcgtttatgttgaaacgctattaaatttgcgctattaaaaaccaaaattgtagtagtgaa 4685842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 14128651 - 14128592
Alignment:
Q  294 aatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtag 353  Q
    ||||||||||||  |||||||||||| |||||| |||||||||| | |||||||| ||||    
T  14128651 aatagcatttatatagaaacgctattaaaattgcgctattaaaaactaaaattgtagtag 14128592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 16232431 - 16232355
Alignment:
Q  127 aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgct 203  Q
    ||||||||||||||||||| ||||||| ||| ||||| || ||||  ||||||| ||  ||| |||| |||||||||    
T  16232431 aaaagcgctatctataccctctccaacaataacgtttgctaaaaaatgctattagtgcaaacaaaaataatagcgct 16232355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 127 - 355
Target Start/End: Original strand, 12630062 - 12630289
Alignment:
Q  127 aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtcc 226  Q
    |||||||||||||||||||||| |||| ||||||||| || ||||||||||||| || |||| | || |||||| |||  | || ||||||||| |  ||    
T  12630062 aaaagcgctatctatacccccttcaacaatagcgtttcct-aaaagcgctattagtgcgaacaagaataatagcacttatagaaaagcgctatctaaccc 12630160  T
Q  227 aatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattg 326  Q
    ||||||| |||||||||| |||||  |||||| | |||||||||||||||||||   ||||||||||||||||| ||||||| |||||||||| ||||||    
T  12630161 aattttttacaagttttttttagcattttctgaagagtgctataacaggtctataatttgcatttttaatagcacttatccaaaaacgctattaaaattg 12630260  T
Q  327 tgctattaaaagccaaaattgtggtagtg 355  Q
    |||||||||||| ||||||||||||||||    
T  12630261 tgctattaaaagtcaaaattgtggtagtg 12630289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 132 - 357
Target Start/End: Original strand, 33736946 - 33737171
Alignment:
Q  132 cgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtccaattt 231  Q
    ||||||||||||||||  |||| |||| |||| |  ||||||||||||| ||||||| | || ||||||||||  | || ||||||||| |  ||| |||    
T  33736946 cgctatctatacccccctcaacaatagtgtttccctaaaagcgctattagtgtgaacaagaataatagcgcttatagaaaagcgctatctaacccagttt 33737045  T
Q  232 ttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgcta 331  Q
    || |||||||||| ||||||||||||| | |||||||||| ||||||||   ||||||||||||||||||||||  |||||||||||| |||||||||||    
T  33737046 tttacaagttttttttagcgctttctgcagagtgctataataggtctataatttgcatttttaatagcatttatgtagaaacgctattaaaattgtgcta 33737145  T
Q  332 ttaaaagccaaaattgtggtagtgaa 357  Q
    ||||| ||||||||||||||||||||    
T  33737146 ttaaaggccaaaattgtggtagtgaa 33737171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 127 - 358
Target Start/End: Complemental strand, 22198142 - 22197913
Alignment:
Q  127 aaaagcgctatctataccccctccaactatagcgttttctgaaaagcgctattaatgtgaaccaaaacaatagcgcttgcaaaagagcgctatccagtcc 226  Q
    |||||||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||  |||||||| ||||||| |   || | || |||||| |  |     
T  22198142 aaaagcgctatctataacccgtccaacaatagcgttt-ctgaaaagcgctattagtgcaaaccaaaataatagcgttcataagaaagtgctatctaacct 22198044  T
Q  227 aatttttaacaagtttttcttagcgctttctgtaaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattg 326  Q
    | ||||||||| |||||||||||||||||||  |||||||||||||||||||||| ||||  ||||||||||| |||||||| || ||||||| ||||||    
T  22198043 agtttttaacatgtttttcttagcgctttcttaaaagtgctataacaggtctatgcgttgt-tttttaatagcgtttatccataaccgctattaaaattg 22197945  T
Q  327 tgctattaaaagccaaaattgtggtagtgaat 358  Q
    ||||||| ||||||||||||||||||||||||    
T  22197944 tgctatttaaagccaaaattgtggtagtgaat 22197913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 5562545 - 5562640
Alignment:
Q  260 aaagtgctataacaggtctatgggttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtg 355  Q
    |||||||||||  |||| | || ||||| ||||||||||| |||||  | |||||||||| || ||| ||||||||||||||||||||| ||||||    
T  5562545 aaagtgctatagaaggtatctgtgttgcctttttaatagcgtttatgtaaaaacgctattaaatttgcgctattaaaagccaaaattgtagtagtg 5562640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 47833 - 47760
Alignment:
Q  283 gttgcatttttaatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtagtga 356  Q
    ||||| |||||||||||||||||  |||||||||||| ||||||||||||||||||| |||||||| |||||||    
T  47833 gttgcctttttaatagcatttatatagaaacgctattaaaattgtgctattaaaagctaaaattgtagtagtga 47760  T

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Target: scaffold0665 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 2853 - 2794
Alignment:
Q  294 aatagcatttatccagaaacgctattgaaattgtgctattaaaagccaaaattgtggtag 353  Q
    ||||||||||||  |||||||||||| |||||| |||||||||| | |||||||| ||||    
T  2853 aatagcatttatatagaaacgctattaaaattgcgctattaaaaactaaaattgtagtag 2794  T

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