View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_14 (Length: 393)
Name: NF1446_high_14
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 16087442 - 16087082
Alignment:
| Q |
17 |
tcaacttcaaactacaataactgtcttcattgctaacattacccttcagcctaatagcttgcatctaaatgattcagttatttaacgagtccaatactgt |
116 |
Q |
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| T |
16087442 |
tcaacttcaaactacaataactgtcttcattgctaacattacccttcagcctaatagcttgcatctaaatgattcagttatttaacgagtccaatactgt |
16087343 |
T |
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| Q |
117 |
cttgcagcctccaaacagaaatgaaagaaatcattcagccacttcacaattccaaaaagcaacgacgtactcatttgtatagccgagttgtatgattcct |
216 |
Q |
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| T |
16087342 |
cttgcagcctccaaacagaaatgaaagaaatcattcagccacttcacaattccaaaaagcaacgacgtactcatttgtatggccgagttgtatgattcct |
16087243 |
T |
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| Q |
217 |
gtaaaatataatagggttatatacaatacaggtgaaactaccaattagaaattataatcaaagttcaaattaaagattatctgtaccttaatgaatggtg |
316 |
Q |
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| T |
16087242 |
gtaaaatataatagggttatatacaatacaggtgaaactaccaattagaaattataatcaaagttcaaattaaagattatctgtaccttaatgaatggtg |
16087143 |
T |
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| Q |
317 |
ttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagac |
377 |
Q |
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| T |
16087142 |
ttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagac |
16087082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 377
Target Start/End: Complemental strand, 16080975 - 16080886
Alignment:
| Q |
288 |
aaagattatctgtaccttaatgaatggtgttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataagagagac |
377 |
Q |
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| T |
16080975 |
aaagtttatatgtacctttatgaatggtgttgctgatctttgtaatttttcaacaattgttcctgaagtattgaaggtcataagagagac |
16080886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 16439818 - 16439775
Alignment:
| Q |
334 |
ttctcaacaattgttactaaagaattgatggacataagagagac |
377 |
Q |
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| T |
16439818 |
ttctcaacaattggtactaaagtattgatggacataagagagac |
16439775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 16438745 - 16438660
Alignment:
| Q |
285 |
attaaagattatctgtaccttaatgaatggtgttgctgacctttggaagttctcaacaattgttactaaagaattgatggacataa |
370 |
Q |
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| T |
16438745 |
attaaagtttatatgtaccttcatgtatggttttgctgacctttgtaacctttcgccaattgttaccaaagtattgatggacataa |
16438660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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