View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_23 (Length: 303)
Name: NF1446_high_23
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 4953547 - 4953720
Alignment:
| Q |
16 |
gggttaagaatttatattgtatggtcattagtattgtaaattagatgactcataagccattaacataaattatttgaagaaacctatgttggagcaaatg |
115 |
Q |
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| T |
4953547 |
gggttaagaatttatattgtatggtcattagtattgtaaattagatgactcataagccattaacataaattatttgaagaaacctatgttggagcaaatg |
4953646 |
T |
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| Q |
116 |
ctttttaatttaagcaagtaacatcttgtacctaaattctagtcattctatcacataagtaatcattgtgttaa |
189 |
Q |
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| T |
4953647 |
ctttttaatttaagcaagtaacatcttgtacctaaattctagtcattctatcacataagtaatcattgtgttaa |
4953720 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 4953718 - 4953779
Alignment:
| Q |
228 |
taacaaagcactttgtcatgattgtgggaaaactaataagctatgtttaaaataacaattat |
289 |
Q |
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| T |
4953718 |
taacaaagcactttgtcatgattgtgggaaaactaataagctatgtttaaaataacaattat |
4953779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 10481440 - 10481186
Alignment:
| Q |
20 |
taagaatttatattgtatggtcattagtattgtaaattagatgactcataagccattaacataaattatttgaagaaacctat--gttggagcaaatgct |
117 |
Q |
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| T |
10481440 |
taagaattaatattttatggtcattagtattgtaaattggatgactcataagccactcacataaattaattgaagggacctatatgttggagcaaatgct |
10481341 |
T |
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| Q |
118 |
ttttaatttaagcaagtaacatcttgtacctaaattctagtcattctatcacataagtaatc-attgtgttaattaaagtacaattctctgtttcttata |
216 |
Q |
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| T |
10481340 |
ttttatcttaagcaagtaacatcttgtacctaaattcaagtcattttatcacataagtaaaccattgtgttaattaacgtacaattctctgattcatatg |
10481241 |
T |
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| Q |
217 |
ttcttgggagctaacaaagcactttgtcatgattgtgggaaaactaataagctat |
271 |
Q |
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| T |
10481240 |
ttcttgagagctaacaaagtactttgtcatcattgtgggaaaactaataagctat |
10481186 |
T |
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