View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_24 (Length: 294)
Name: NF1446_high_24
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 54565909 - 54565629
Alignment:
| Q |
16 |
acaaacagcgtgtattactcctacaacctggtacgaacgagaaaagagaatcatatgaaaagttaggagaatgaacgagaaacacctgagtagtgagtga |
115 |
Q |
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| T |
54565909 |
acaaacagcgtgtattactcctacaacctggtacgaacgagaaaagagaatcatatgaaaagttaggagaatgaacgagaaacacctgagtagtgagtga |
54565810 |
T |
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| Q |
116 |
gtgagtcaatgttagtcaaacacac--acactctcacacataaaccgtggaaattcaacaaacactaaactcgtttagctttttgcattaatcgattaac |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54565809 |
gtgagtcaatgttagtcaaacacacacacactctcacacataaaccgtggaaattcaacaaacactaaactcgtttagctttttgcattaatcgattaac |
54565710 |
T |
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| Q |
214 |
nnnnnnngttctctttctctagaagcttctctttctgcgtctaagtttccatggctgagcatcgcgtctctgaagctctcc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54565709 |
aaaaaaagttctctttctctagaagcttctctttctgcgtctaagtttccatggctgagcatcgcgtctctgaagctctcc |
54565629 |
T |
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