View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_27 (Length: 254)
Name: NF1446_high_27
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 25443812 - 25443567
Alignment:
| Q |
7 |
caaacaatcaccgttattgatggttatggtccttcctttccttgtatcatcacagccgttgatctcctagctgatcctcacaccgatgaggtcttcgcca |
106 |
Q |
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| T |
25443812 |
caaacaatcacggttattgatggatatggtccttcctttccttgtatcatcacagccgttgatctcctagctgatcctcacaccgatgaggtcttcgcca |
25443713 |
T |
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| Q |
107 |
aattgctactcagtccggtaactgaaggacaagaacttcctgaggttgttgacgaagaagacgacggtggtgataagtttgtttccttcgtaaagactct |
206 |
Q |
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| T |
25443712 |
aattgctactcagtccggtaactgaaggacaagaatttcctgaggttgttgacgaagaagacgacggtggtgataagtttgtttccttcgtaaagactct |
25443613 |
T |
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| Q |
207 |
tacgaaatctgattctaataacggcggtggattctctgtacctcgc |
252 |
Q |
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| T |
25443612 |
tacaaaatctgattctaataacggtggtggattctctgtacctcgc |
25443567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 26099323 - 26099248
Alignment:
| Q |
52 |
atcatcacagccgttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaa |
127 |
Q |
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| T |
26099323 |
atcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgtaa |
26099248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 25224950 - 25225019
Alignment:
| Q |
62 |
ccgttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaactga |
131 |
Q |
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| T |
25224950 |
ccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaactga |
25225019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 25289106 - 25289175
Alignment:
| Q |
62 |
ccgttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaactga |
131 |
Q |
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| T |
25289106 |
ccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaactga |
25289175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 25728298 - 25728229
Alignment:
| Q |
62 |
ccgttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaactga |
131 |
Q |
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| T |
25728298 |
ccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaactga |
25728229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 560760 - 560839
Alignment:
| Q |
49 |
tgtatcatcacagccgttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaac |
128 |
Q |
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| T |
560760 |
tgtatcatctccgctgttgatctcctcgccgatcctcacactgatgaggtcttcgctaaactgctgctcactcctgtaac |
560839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 8823314 - 8823390
Alignment:
| Q |
175 |
ggtgataagtttgtttccttcgtaaagactcttacgaaatctgattctaataacggcggtggattctctgtacctcg |
251 |
Q |
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| T |
8823314 |
ggtgatgagtttgtttcctctggaaagactctaaccctatctgatgctaataacggtggtgcattctccgtacctcg |
8823390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 25618066 - 25618132
Alignment:
| Q |
62 |
ccgttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaac |
128 |
Q |
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| T |
25618066 |
ccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac |
25618132 |
T |
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