View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_28 (Length: 244)
Name: NF1446_high_28
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 51821565 - 51821337
Alignment:
| Q |
1 |
ttattggtatcaacttttttcatctttaatttacaaatactcttcagcagttcttgtttcacaaacataagcaatattctttaatgaagtggtgacttgg |
100 |
Q |
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| T |
51821565 |
ttattggtatcaacttttttcatctttaatttacaaatactcttcagcagttcttgtttcacaaacataagcaatattctttaatgaagtggtgacctgg |
51821466 |
T |
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| Q |
101 |
ctttttaccttctacagagttggctaagccttcaagtttcgatatggtggatttatgaaggtcttcccctgaccaattcggaaatacaaatagactcata |
200 |
Q |
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| T |
51821465 |
ctttttaccttctacagagttggctaagccttcaagttttgatatggtggatttatgaaggtcttcccctgaccaattcggaaatacaaatagactcata |
51821366 |
T |
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| Q |
201 |
acaagacaaagaccaacgccgatgcatat |
229 |
Q |
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| T |
51821365 |
acaagacaaagaccaacgccgatgcatat |
51821337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 51861422 - 51861296
Alignment:
| Q |
103 |
ttttaccttctacagagttggctaagccttcaagtttcgatatggtggatttatgaaggtcttcccctgaccaattcggaaatacaaatagactcataac |
202 |
Q |
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|||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| || |
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| T |
51861422 |
ttttaccttctatagagttggctaagccttcaagctttgatatggtggatttatgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcac |
51861323 |
T |
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| Q |
203 |
aagacaaagaccaacgccgatgcatat |
229 |
Q |
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| T |
51861322 |
aagacaaatagcaacgccgatgcatat |
51861296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 229
Target Start/End: Complemental strand, 51851268 - 51851144
Alignment:
| Q |
105 |
ttaccttctacagagttggctaagccttcaagtttcgatatggtggatttatgaaggtcttcccctgaccaattcggaaatacaaatagactcataacaa |
204 |
Q |
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|||||||||| || |||||||| |||||||| || ||||||||||||||||| || |||||||||||||| || |||||||||||||| ||||| |||| |
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| T |
51851268 |
ttaccttctatggatttggctaatccttcaagctttgatatggtggatttatggagttcttcccctgaccagtttggaaatacaaataggctcatcacaa |
51851169 |
T |
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| Q |
205 |
gacaaagaccaacgccgatgcatat |
229 |
Q |
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|||||||||||||||| |||||||| |
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| T |
51851168 |
gacaaagaccaacgcctatgcatat |
51851144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 40634416 - 40634312
Alignment:
| Q |
106 |
taccttctacagagttggctaagccttcaagtttcgatatggtggatttatgaaggtcttcccctgaccaattcggaaatacaaatagactcataacaag |
205 |
Q |
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||||||||| ||| ||||| | |||||||||||| | ||||| | |||||||||||||||||||||||| |||||||| || |||||||| | ||| |
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| T |
40634416 |
taccttctatagatttggcaaggccttcaagtttgaaagctgtggaatgatgaaggtcttcccctgaccaatttggaaatactaaaagactcatgaaaag |
40634317 |
T |
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| Q |
206 |
acaaa |
210 |
Q |
| |
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||||| |
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| T |
40634316 |
acaaa |
40634312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 42454230 - 42454276
Alignment:
| Q |
110 |
ttctacagagttggctaagccttcaagtttcgatatggtggatttat |
156 |
Q |
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||||| |||| |||||||||||||||| || |||||||||||||||| |
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| T |
42454230 |
ttctatagagatggctaagccttcaagctttgatatggtggatttat |
42454276 |
T |
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