View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_3 (Length: 697)
Name: NF1446_high_3
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 128 - 605
Target Start/End: Complemental strand, 45598638 - 45598154
Alignment:
| Q |
128 |
tggccggcctaattgtcaaatcgttaaaaaatgtaaatgtttgtgtatttttctctataatttatatttattaatctttacataaacatactttgatcgg |
227 |
Q |
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| T |
45598638 |
tggccggcctaattgtcaaatcgttaaaaaatgtaaatgtttgtgtatttttctctataatttatatttattaatctttacataaacatactttgatcgg |
45598539 |
T |
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| Q |
228 |
tatttnnnnnnnntctaccgcaatacttcatcctaatatttcacgttgtttcttaggttagaaacatc-------aggtcctaatatttacaatggattg |
320 |
Q |
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| T |
45598538 |
tatttaaaaaaaatctaccacaatacttcatcctaatatttcacgctgtttctggggttagaaacattgaattggaggtcctaatatttacaacggattg |
45598439 |
T |
|
| Q |
321 |
aattaagcccaattctctttctggttgtccgacattatatatttccctcataacacttgtcatagacgtccacttcaaacacttcctcttccacctcatc |
420 |
Q |
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| T |
45598438 |
aattaagtccaattctctttctggctgtccggcattatatatttccctcataacacttgtcacagacttccacttcaaacacttcctcttccgcctcatc |
45598339 |
T |
|
| Q |
421 |
taactcgcccgaccccagttcccgatcccaaactgaaatgtctcaaaaaagccatttacttagattagtacaacaattattatttaatttggtcaaatgt |
520 |
Q |
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| T |
45598338 |
taactcgcccgaccccagttcccgatcccaaactgaaatgtctcaaaaaagccatttacttagattagtacaacaattattatttaatttggtcaaatgt |
45598239 |
T |
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| Q |
521 |
taatattcctataataaatagtttatttttcgagccaaagtaattgcttattatggttgtttctttgcttaaatgatcacagtgt |
605 |
Q |
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| T |
45598238 |
taatattcctataataaatagtttatttttcgagccaaagtaattgcttattatggttttttctttgcttaaatgattacagtgt |
45598154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 45598753 - 45598705
Alignment:
| Q |
13 |
aatattaatgggttatttattatgattatgtttgtcatttacttagatt |
61 |
Q |
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| T |
45598753 |
aatattaatgggttatttattatgattatgtttgtcatttacttagatt |
45598705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 633 - 661
Target Start/End: Complemental strand, 45598129 - 45598101
Alignment:
| Q |
633 |
aataagtaggacaatatactttatggaag |
661 |
Q |
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| T |
45598129 |
aataagtaggacaatatactttatggaag |
45598101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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