View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_30 (Length: 241)
Name: NF1446_high_30
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 29088918 - 29089049
Alignment:
| Q |
91 |
agagatcttgttaaataaactagtttattctaactcaaatgcacccaaaacattcatcatcaaccgaaacttatttatatttgagcacaattacttgatt |
190 |
Q |
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| T |
29088918 |
agagatcttgttaaataaattagtttattcgaactcaaatgcacccaaaacattcatcatcaatcgaaacttatttatacttgagcacaattacttgatt |
29089017 |
T |
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| Q |
191 |
tgatttatgtacaataaacacaaggagtcaac |
222 |
Q |
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| T |
29089018 |
tgatttatttacaataaacataaggagtcaac |
29089049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29088833 - 29088893
Alignment:
| Q |
1 |
ttagctgctatgcataacttttcgatcaaaactgctatgcataattacttattaattaaat |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29088833 |
ttagctgctatgcataacttttcgatcaaaactgctatgcataattacttattaattaaat |
29088893 |
T |
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