View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_33 (Length: 237)
Name: NF1446_high_33
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30687033 - 30686813
Alignment:
| Q |
1 |
gtgcaaaatgtgatggcatacaatgtgtcacaatttgcttcaagtgtgaaaatccaaagagttgttgtgagtgtaaacctattataaagagttgttgtaa |
100 |
Q |
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| T |
30687033 |
gtgcaaaatgtgatggcatacaatgtgtcacaatttgcttcaagtgtgaaaatccaaagagttgttgtgagtgtaaacctattataaagagttgttgtaa |
30686934 |
T |
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| Q |
101 |
caacaagaagtgtgatgatggttgcactcctaagaagcctccttcaccaaaagttcaacaatgtcctcaatggtgcacatgccctaggtgttatggttat |
200 |
Q |
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| T |
30686933 |
caacaagaagtgtgatgatggttgcactcctaagaagcctccttcaccaaaagttcaacaatgtcctcaatggtgcacatgctctaggtgttatggttat |
30686834 |
T |
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| Q |
201 |
gctccatatcaaccttattgt |
221 |
Q |
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| T |
30686833 |
gctccatatcaaccttattgt |
30686813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 30713044 - 30712976
Alignment:
| Q |
127 |
ctcctaagaagcctccttcaccaaaagttcaacaatgtcctcaatggtgcacatgccctaggtgttatg |
195 |
Q |
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| T |
30713044 |
ctcctgagaagcctcctacaccaccgatccaacaatgtcctcaatggtgcacatgccctaaatgttatg |
30712976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 30731354 - 30731286
Alignment:
| Q |
127 |
ctcctaagaagcctccttcaccaaaagttcaacaatgtcctcaatggtgcacatgccctaggtgttatg |
195 |
Q |
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| T |
30731354 |
ctcctgagaagcctcctacaccaccgatccaacaatgtcctcaatggtgcacatgccctaaatgttatg |
30731286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 30686434 - 30686464
Alignment:
| Q |
191 |
ttatggttatgctccatatcaaccttattgt |
221 |
Q |
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| T |
30686434 |
ttatggttatgctccatatcaaccttattgt |
30686464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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