View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1446_high_39 (Length: 213)
Name: NF1446_high_39
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_39 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 27772013 - 27771821
Alignment:
| Q |
21 |
tttcaatatcctgatgatgattcaaaaccatatttctctcctcttgttattgcaattttgggagttttagccactgcttttttactactaacttattaca |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27772013 |
tttcaataccctgatgatgattcaaaaccatatttttctcctcttgttattgcaattttgggagttttagccactgcttttttactactaacttattaca |
27771914 |
T |
|
| Q |
121 |
ctctaatatctaaatattgtggtcacagagaatctgcaagaagaaacaccaatgacccagttgatgaaatccaagaaaatcgccgcgaaaatt |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771913 |
ctctaatatccaaatattgtggtcacagagaatcttcaagaagaaacaccaatgacccagttgatgaaatccaagaaaatcgccgcgaaaatt |
27771821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 12618219 - 12618095
Alignment:
| Q |
30 |
cctgatgatgattcaaaaccatatttctctcctcttgttattgcaattttgggagttttagccactgcttttttactactaacttattacactctaatat |
129 |
Q |
| |
|
|||||||| ||||||| ||| |||| ||||||||||| |||||||| | ||| | ||||| | ||||||| | || ||||||| ||||| |||||| |
|
|
| T |
12618219 |
cctgatgaagattcaagtccaaatttttctcctcttgtcattgcaatcattggaatcttagcaagtgcttttcttcttgtaacttactacaccataatat |
12618120 |
T |
|
| Q |
130 |
ctaaatattgtggtcacagagaatc |
154 |
Q |
| |
|
| || |||||||||| ||||||||| |
|
|
| T |
12618119 |
caaagtattgtggtcgcagagaatc |
12618095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University