View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_4 (Length: 515)
Name: NF1446_high_4
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 134 - 493
Target Start/End: Complemental strand, 19577591 - 19577232
Alignment:
| Q |
134 |
ttcattcattcaattctcaaccccttttttcttcactcaattatcacactatggttcgtgaacacagagtcgattcattctacaccaaactccgtcaatc |
233 |
Q |
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| T |
19577591 |
ttcattcattcaattctcaaccccttctttcttcactcaattatcacactatggttcgtgaacacagagtcgattcattttacacaaaactccgtcagtc |
19577492 |
T |
|
| Q |
234 |
cgcccaactttcttccaccacatcccccgtcctcattttcccctcaacctccgacgtcgattccctctgcgcactcaaaacccttttccgtattctcgaa |
333 |
Q |
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| T |
19577491 |
cgcccaactttcttccaccacatcccccgtcctcattttcccctcaacctccgacgtcgattccctctgcgcactcaaaacccttttccgtattctcgaa |
19577392 |
T |
|
| Q |
334 |
tccgattcaattcaatacgcatcttaccccgtttcatccttccgcgaaattcataattatgctaaacccaccccccaaaacattaaccacacctccattg |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577391 |
tccgattcaattcaatacgcatcttaccccgtttcatccttccgcgaaattcataattatgctaaacccaccccccaaaacattaaccacacctccattg |
19577292 |
T |
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| Q |
434 |
ttttaatcaactggggctctcataaagatcttcgcaaaatacttaacttaggtccttatg |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577291 |
ttttaatcaactggggctctcataaagatcttcgcaaaatacttaacttaggtccttatg |
19577232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19577720 - 19577656
Alignment:
| Q |
1 |
aataccgccaaattttcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc |
65 |
Q |
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| T |
19577720 |
aataccgccaaattttcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc |
19577656 |
T |
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