View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_high_5 (Length: 504)
Name: NF1446_high_5
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 489
Target Start/End: Complemental strand, 49593816 - 49593344
Alignment:
| Q |
12 |
acagatgggatcactacactcaaatccatgtcaaacaagctcatcttcaaataaaaaataataattcgcacaccctacaaacaagtaacaacaactactc |
111 |
Q |
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| T |
49593816 |
acagatgggatcactacactcaaatccatgtcaaacaagctcatcttcaaataaaaaataataattcgcacaccctacaaacaagtaacaacaactactc |
49593717 |
T |
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| Q |
112 |
tgaacctgaaatcatcacaaaaaacgaagaatatgtaccagttagtcatgcactcttcattatcatagtgtgatataatatgtaacaatttttagtannn |
211 |
Q |
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| T |
49593716 |
tgaacctgaaatcatcacaaaaaacgaagaatatgtaccagttagtcatgcactcttcattatcatagtgtgatataatatgtaacattttttagtattt |
49593617 |
T |
|
| Q |
212 |
nnnnggtgaatcagctaatctacacaaataattattctaaccttacaacaaactgagatgttttataagacagacatcaatagttaaaagagaatcacnn |
311 |
Q |
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| T |
49593616 |
ttttggtgaatcagctaatctacacaaatgattattctaaccttacaacaaacttagatgtttaattagacagacatcaatagttaaaagagaatcac-t |
49593518 |
T |
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| Q |
312 |
nnnnnnataaagataatttagggtga-ggggtgatctggtacaaggtagagaaaa-ccttcaaattcaaagatatttatatttataaataaatttacatt |
409 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| |
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| T |
49593517 |
ttttttataaagataatttagggtgagggggtaatctggtacaaggtagagaaaatctttcaaattcaaag------atatttataaataaatttacatt |
49593424 |
T |
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| Q |
410 |
tatttctctctaaggacatttgcgggtctagaacccggaacatccaggtccaagaacaaacccttgaaattagaagagaa |
489 |
Q |
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| T |
49593423 |
tatttttctctgaggacatttgcgtgtctcgaacccggaacctccaggtccaagaccaaacccttgaaattaaaagagaa |
49593344 |
T |
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