View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_1 (Length: 991)
Name: NF1446_low_1
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 43218839 - 43219327
Alignment:
| Q |
17 |
acaacttaatgccaatacgatccctacctaacattaccatcaaattgcaaactaattcaaagtccagatgcccaaaaaccagtaggatggatataaacca |
116 |
Q |
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| T |
43218839 |
acaacttaatgccaatacgatccctacctaacattaccatcaaattgcaaactaattcaaagtccagatgcccaaaaaccagtaggatggatataaacca |
43218938 |
T |
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| Q |
117 |
tatgcaagtgcaacatattctaaacaaaaatatcaaacattaa---------tctgaaggaagtcaggaactaagctagcttgattttctcttcatcaat |
207 |
Q |
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| T |
43218939 |
tatgcaagtgcaacatattctaaacaaaaatatcaaaaattaaaagtctttatctgaaggaagtcaggaactaagctagcttgattttctcttcatcaat |
43219038 |
T |
|
| Q |
208 |
ctcttcttgattctataggaataaacttgcaatagtcttagttcaacaatgtgccttgtatatgtggtttgcatgtactgaaagaattattatgtatcag |
307 |
Q |
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| T |
43219039 |
ctcttcttgattctataggaataaacttgcaatagtcttagttcaacaatgtgccttgtatatgtggtttgcatgtactgaaagaattattatgtatcag |
43219138 |
T |
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| Q |
308 |
ttgttatataatacaatttcaatttgtgtatcaatgattcaaaaatttcaaccaaattnnnnnnngttaatctgaaagggtacaatccaagacttatatt |
407 |
Q |
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| T |
43219139 |
ttgttatataatacaatttcaatttgtgtatcaatgattcaaaaatttcaaccaaatt-aaaaaagttaatctgaaagggtacaatccaagacttatatt |
43219237 |
T |
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| Q |
408 |
tgatacaaagtctatctcacatatttacaagagactccagcaataaatatgacgagtttcttgtcaacaattttaaaattcatttatcaa |
497 |
Q |
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| T |
43219238 |
ttatacaaagtctatctcacatatttacaagagactccagcaataaatatgacgagtttcttgtcaacaattttaaaattcatttttcaa |
43219327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 732 - 991
Target Start/End: Original strand, 43219478 - 43219726
Alignment:
| Q |
732 |
attgacaaaaggatgaaaatgagcaatgttgacagagtcaaggataattttactatgaacaaatgatggtaagaattacaaaatccaatacaattaaatt |
831 |
Q |
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| T |
43219478 |
attgacaaaaggatgaaaatgagcaatgttgacagagtcaaggataattttactatgaacaaatgatggt--gaattacaaaatcaaatacaattaaatt |
43219575 |
T |
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| Q |
832 |
caatacaaaagtgaaaacataaacaaagtgaaggtcattaaagaggcacaacacatgaggacctaaatagaagaagaaacaaatatatcaagaaaacaac |
931 |
Q |
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| T |
43219576 |
caatacaaaagtgaaaacataaacaaagtgaaggtcatta---------aacacatgaggacctaaatagaagaagaaacaaatatatcaagaaaacaac |
43219666 |
T |
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| Q |
932 |
acttgttatgaaattgcagatacatttgcaaaaatactgagcaattattaccactttgat |
991 |
Q |
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| T |
43219667 |
acttgttatgaaattacagatacatttgcaaaaatactgagcaattattaccactttgat |
43219726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 644 - 705
Target Start/End: Original strand, 43219416 - 43219477
Alignment:
| Q |
644 |
tgaaaccatgtgttaattgatagtacattgtacattatagaaactaaattgacattgacgga |
705 |
Q |
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| T |
43219416 |
tgaaaccatgtgttaattgatagtacattgtacattatagaaactaaattgacattgacgga |
43219477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 574 - 621
Target Start/End: Original strand, 43219325 - 43219372
Alignment:
| Q |
574 |
caaattgaaccctaggtcagcctaagagtgaatgaagtctaaaacaaa |
621 |
Q |
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| T |
43219325 |
caaattgaaccctaggtcagcctaagagtgaatgaagtctaaaacaaa |
43219372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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