View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1446_low_15 (Length: 379)

Name: NF1446_low_15
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1446_low_15
NF1446_low_15
[»] chr4 (1 HSPs)
chr4 (12-363)||(49592955-49593305)
[»] chr5 (1 HSPs)
chr5 (254-363)||(7234986-7235092)
[»] chr6 (2 HSPs)
chr6 (45-110)||(5605236-5605301)
chr6 (38-86)||(15528431-15528479)
[»] chr2 (2 HSPs)
chr2 (45-110)||(26051198-26051263)
chr2 (66-108)||(15996828-15996870)
[»] chr1 (3 HSPs)
chr1 (38-107)||(25901873-25901942)
chr1 (66-104)||(37596576-37596614)
chr1 (48-112)||(36567445-36567509)
[»] chr7 (3 HSPs)
chr7 (45-108)||(31765455-31765518)
chr7 (44-106)||(6271374-6271436)
chr7 (38-110)||(43131993-43132065)
[»] chr8 (3 HSPs)
chr8 (44-82)||(8753330-8753368)
chr8 (48-104)||(28009491-28009547)
chr8 (48-104)||(28066794-28066850)
[»] chr3 (1 HSPs)
chr3 (48-110)||(50170574-50170636)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 49593305 - 49592955
Alignment:
Q  12 atattaattttaaaataatcacacaaaaattctaagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcccttta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  49593305 atattaattttaaaataatcacacaaaaattctaagaaaaaccttctacaattagtttcttaacttatgcccaaaaa-tataagttagcatttcccttta 49593207  T
Q  112 ttttaatacgttatttatacaggtgagactataagacaaaaccattagttaaggtaatcctaggaaatttaggtgaagggcacaagattgtgatcaagtt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49593206 ttttaatacgttatttatacaggtgagactataagacaaaaccattagttaaggtaatcctaggaaatttaggtgaagggcacaagattgtgatcaagtt 49593107  T
Q  212 gttactacatagctacaactctatccattttatataagataaaaaccagttagcaacctactatttaaccacatctcggttacttaattaatataaaaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  49593106 gttactacatagctacaactctatccattttatataagataaaaaccagttaaaaacctactatttaaccacacctcggttacttaattaatataaaaat 49593007  T
Q  312 actcatcaaataacttactcacacattcatcttttgtgacaaattaaataat 363  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49593006 actcatcaaataacttactcacacattcatcttttgtgacacattaaataat 49592955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 7234986 - 7235092
Alignment:
Q  254 aaaccagttagcaacctactatttaaccacatctcggttacttaattaatataaaaatactcatcaaataacttactcacacattcatcttttgtgacaa 353  Q
    ||||||||||||||||||| ||||||||||  ||| | ||||||||||||||||||||||||||||||||||  |||||||||| ||||| ||||||||     
T  7234986 aaaccagttagcaacctacaatttaaccac--ctcagatacttaattaatataaaaatactcatcaaataac-cactcacacatccatctcttgtgacac 7235082  T
Q  354 attaaataat 363  Q
    ||||||||||    
T  7235083 attaaataat 7235092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 5605301 - 5605236
Alignment:
Q  45 aagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcccttt 110  Q
    ||||||||||||||||| ||  ||||||||||||||||||||| | | || ||| |||||||||||    
T  5605301 aagaaaaaccttctacatttgatttcttaacttatgccccaaaggcacaaattatcatttcccttt 5605236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 15528431 - 15528479
Alignment:
Q  38 aaattctaagaaaaaccttctacaattagtttcttaacttatgccccaa 86  Q
    |||||| |||||||| |||||||| ||||||| ||||||||||||||||    
T  15528431 aaattccaagaaaaatcttctacatttagttttttaacttatgccccaa 15528479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 26051263 - 26051198
Alignment:
Q  45 aagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcccttt 110  Q
    ||||||| ||||||||| |||||||||||||||||| ||||| || | |||||| ||| |||||||    
T  26051263 aagaaaatccttctacatttagtttcttaacttatgtcccaagagcacaagttaacatctcccttt 26051198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 15996828 - 15996870
Alignment:
Q  66 gtttcttaacttatgccccaaaagtataagttagcatttccct 108  Q
    ||||||||||||||||||||| |||| |||||| |||||||||    
T  15996828 gtttcttaacttatgccccaagagtacaagttaacatttccct 15996870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 25901873 - 25901942
Alignment:
Q  38 aaattctaagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttccc 107  Q
    |||||| ||||||||||||||| | |||||||||||||||||| |||||  | | |||||| ||||||||    
T  25901873 aaattccaagaaaaaccttctagatttagtttcttaacttatgtcccaagggcacaagttaacatttccc 25901942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 37596576 - 37596614
Alignment:
Q  66 gtttcttaacttatgccccaaaagtataagttagcattt 104  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  37596576 gtttgttaacttatgccccaaaagtataagttaacattt 37596614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 36567445 - 36567509
Alignment:
Q  48 aaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttccctttat 112  Q
    ||||| |||||||| ||||||||||||||| ||||| ||| | | |||||| ||||| |||||||    
T  36567445 aaaaaacttctacatttagtttcttaacttctgccctaaaggcacaagttaacattttcctttat 36567509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 31765455 - 31765518
Alignment:
Q  45 aagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttccct 108  Q
    |||||||| |||||||| || |||||||||||||||||||||| | | ||||| | ||||||||    
T  31765455 aagaaaaaacttctacatttggtttcttaacttatgccccaaaggcacaagttggaatttccct 31765518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 6271374 - 6271436
Alignment:
Q  44 taagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcc 106  Q
    |||||||||| ||||||| ||  ||||||||||||||||||||  | |||||||| |||||||    
T  6271374 taagaaaaactttctacatttgctttcttaacttatgccccaagggcataagttaacatttcc 6271436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 43131993 - 43132065
Alignment:
Q  38 aaattctaagaaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcccttt 110  Q
    |||||| || |||||||||||  | ||  ||||||||||||||||||||  | | ||||||||||||||||||    
T  43131993 aaattccaaaaaaaaccttctgaatttgatttcttaacttatgccccaagggcacaagttagcatttcccttt 43132065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 8753330 - 8753368
Alignment:
Q  44 taagaaaaaccttctacaattagtttcttaacttatgcc 82  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  8753330 taagaaaaacattctacatttagtttcttaacttatgcc 8753368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 28009491 - 28009547
Alignment:
Q  48 aaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcattt 104  Q
    ||||| |||||||| ||||||| ||||||||||| ||||||| | |||||| |||||    
T  28009491 aaaaaacttctacatttagtttattaacttatgctccaaaagaaaaagttaacattt 28009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 28066794 - 28066850
Alignment:
Q  48 aaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcattt 104  Q
    ||||| |||||||| ||||||| ||||||||||| ||||||| | |||||| |||||    
T  28066794 aaaaaacttctacatttagtttattaacttatgctccaaaagaaaaagttaacattt 28066850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 50170574 - 50170636
Alignment:
Q  48 aaaaaccttctacaattagtttcttaacttatgccccaaaagtataagttagcatttcccttt 110  Q
    ||||| |||||||| || |||||||||||||||||||||  | | |||||| |||||||||||    
T  50170574 aaaaaacttctacatttggtttcttaacttatgccccaagggcacaagttaacatttcccttt 50170636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University