View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_17 (Length: 368)
Name: NF1446_low_17
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 10981420 - 10981080
Alignment:
| Q |
18 |
ggaataagagactgtcgaatctaccacctgagacactatgacactagcaatgagtcctgtcttaacatttcttcctgctgtattgaaccattccgaggtg |
117 |
Q |
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| T |
10981420 |
ggaataagagactgttgaatctatcacctgagacactatgacactagcaatgagtcctgtcttaacatttcttcctgctgtattgaaccattccgaggtg |
10981321 |
T |
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| Q |
118 |
tgccgggacccaacatacctcttctctagccatacctgtccaataagaatgtttgtatcaaacaaattcaacatggcaccaaatgaatgaatttggttta |
217 |
Q |
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| T |
10981320 |
tgccgggacccaacatacctcttctctagccatacctgtccaataagaatgtttgtatcaaacaaattcaacatggcaccaaatgaatgaatttggttta |
10981221 |
T |
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| Q |
218 |
gtttggaacacactttaaacttgtaggtggaaggaccaaggtttgatcccccactgacattacacattttcggggagggacggtgtgctttaagtgtgac |
317 |
Q |
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| T |
10981220 |
gtttggaacacactttaaacttgtaggtggaaggaccaaggtttgataccccactgacattacacattttcggggagggacggtgtgctttaagtgtgac |
10981121 |
T |
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| Q |
318 |
taaaattctatttggatagataacttaattaagtgcctatg |
358 |
Q |
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| T |
10981120 |
taaaattctatttggatagataacttaattaagtgcttatg |
10981080 |
T |
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