View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1446_low_2 (Length: 753)

Name: NF1446_low_2
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1446_low_2
NF1446_low_2
[»] chr7 (5 HSPs)
chr7 (48-734)||(36126895-36127595)
chr7 (1-38)||(36126865-36126902)
chr7 (356-458)||(27571822-27571922)
chr7 (301-347)||(15050181-15050226)
chr7 (406-459)||(30182320-30182373)
[»] chr4 (4 HSPs)
chr4 (352-449)||(18596995-18597091)
chr4 (411-459)||(2206367-2206415)
chr4 (356-450)||(8330075-8330168)
chr4 (371-459)||(32818394-32818480)
[»] chr2 (1 HSPs)
chr2 (366-459)||(3476453-3476545)
[»] chr6 (3 HSPs)
chr6 (371-459)||(2234490-2234576)
chr6 (405-459)||(30926802-30926856)
chr6 (405-459)||(31305871-31305925)
[»] chr1 (2 HSPs)
chr1 (406-459)||(3515826-3515879)
chr1 (306-347)||(8130851-8130892)
[»] chr3 (2 HSPs)
chr3 (356-459)||(35058321-35058422)
chr3 (405-459)||(51285577-51285631)
[»] scaffold0361 (1 HSPs)
scaffold0361 (304-343)||(14268-14307)
[»] chr8 (2 HSPs)
chr8 (352-450)||(32056320-32056416)
chr8 (300-345)||(30251625-30251670)
[»] chr5 (2 HSPs)
chr5 (306-347)||(15368136-15368177)
chr5 (356-401)||(29922586-29922631)


Alignment Details
Target: chr7 (Bit Score: 634; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 48 - 734
Target Start/End: Original strand, 36126895 - 36127595
Alignment:
Q  48 aaaccttcaccagtcataccatacctgcatttttgcatctcaaaaaacaaaccacgtgcctgatccgttctattatgcctagcatgcaacctaatcatca 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36126895 aaaccttcaccagtcataccatacctgcatttttgcatctcaaaaaacaaaccacgtgcctgatccgttctattatgcctagcatgcaacctaatcatca 36126994  T
Q  148 tgttgtacatatctgttctggcacaataatttttctgattcttcatccagctgaaaactaagttacagtgttcaattgaacctcgttgtgtcaactccta 247  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36126995 tgttgtatatatctgttctggcacaataatttttctgattcttcatccagctgaaaactaagttacagtgttcaattgaacctcgttgtgtcaactccta 36127094  T
Q  248 tcaaatatgaaaatacaat--------------tgtattgtttaagctaaaattgagtcagaagcttctaagtgtatgtttggttccacttcaggaagag 333  Q
    |||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127095 tcaaatatgaaaatacaatgcacaatgattaattgtattgtttaagctaaaattgagtcagaagcttctaagtgtatgtttggttccacttcaggaagag 36127194  T
Q  334 ccaaaattgattctggaaacaagtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttca 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36127195 ccaaaattgattctggaaacaagtttgattggtctcaagtaaaattgattttgcatcaagaattgattcctaactttaagctaaaaattgaagattttca 36127294  T
Q  434 ttctagaattgatttttgcactcaaactaccataaatcactttattttcaactgtcaatttttgtcaaagcagaatcaaacaagcactaaggttgtagtt 533  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127295 ttctagaattgattttagcactcaaactaccataaatcactttattttcaactgtcaatttttgtcaaagcagaatcaaacaagcactaaggttgtagtt 36127394  T
Q  534 gtagtcatggaagagtgaagagaaaggaaaagtgcgatactctgatgaggaaagggaaattcttgcgagcgaatcgaccaatccaacgattgagcaggcc 633  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127395 gtagtcatggaagagtgaagagaaaggtaaagtgcgatactctgatgaggaaagggaaattcttgcgagcgaatcgaccaatccaacgattgagcaggcc 36127494  T
Q  634 ttcaatgtcgtcacggagagtgagggagaggacggagtcgacgacctccgacacggtccaatccttttggaagcgcttaccggcaacacggaggcggtag 733  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36127495 ttcaatgtcgtcacggagagtgagggagaggacggagtcgacgacctccgacacggtccaatccttttggaagcggttaccggcaacacggaggcggtag 36127594  T
Q  734 t 734  Q
    |    
T  36127595 t 36127595  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36126865 - 36126902
Alignment:
Q  1 cacacaattactaacaacgattaaataactaaaccttc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36126865 cacacaattactaacaacgattaaataactaaaccttc 36126902  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 356 - 458
Target Start/End: Original strand, 27571822 - 27571922
Alignment:
Q  356 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcact 455  Q
    ||||||||| |||| |||| |||||||||| | |||||||||||||  | |||| ||| || |||||| || |||| |||||||||||||||||  ||||    
T  27571822 gtttgattgctctcgagtataattgattttacctcaagaattgatt--ctacttgaagttagaaattggagcttttgattctagaattgattttaacact 27571919  T
Q  456 caa 458  Q
    |||    
T  27571920 caa 27571922  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 15050181 - 15050226
Alignment:
Q  301 ctaagtgtatgtttggttccacttcaggaagagccaaaattgattct 347  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||    
T  15050181 ctaagtgtatgtttggttccactt-tggaggagccaaaattgattct 15050226  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 459
Target Start/End: Complemental strand, 30182373 - 30182320
Alignment:
Q  406 actttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    |||| ||||||||||||| || |||| ||||||||||| |||||| ||||||||    
T  30182373 acttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaa 30182320  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 352 - 449
Target Start/End: Original strand, 18596995 - 18597091
Alignment:
Q  352 acaagtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttt 449  Q
    ||||||||||||  |||||||||||||||||||| | || |||||||||| | ||||| |||||| || |||||  |||| |||||| ||||||||||    
T  18596995 acaagtttgatttctctcaagtaaaattgattttacctccagaattgatt-ctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 459
Target Start/End: Complemental strand, 2206415 - 2206367
Alignment:
Q  411 aagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    ||||||||||||| || |||| ||||||| |||||||||||||||||||    
T  2206415 aagctaaaaattggagcttttgattctaggattgatttttgcactcaaa 2206367  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 450
Target Start/End: Original strand, 8330075 - 8330168
Alignment:
Q  356 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgattttt 450  Q
    ||||| ||| |||||||||||||||||| ||| || | ||| |||||  ||||| |||||| |||||| || |||| |||||| |||||||||||    
T  8330075 gtttggttgctctcaagtaaaattgattctgcctccataatggattct-aacttgaagctagaaattggagcttttgattctataattgattttt 8330168  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 459
Target Start/End: Complemental strand, 32818480 - 32818394
Alignment:
Q  371 agtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    |||| |||||||||||| || |||||||||||   | || |||||| || ||| || |||| |||||||||||||||||||||| ||||    
T  32818480 agtagaattgattttgcctccagaattgattct--atttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaa 32818394  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 366 - 459
Target Start/End: Complemental strand, 3476545 - 3476453
Alignment:
Q  366 tctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    |||| ||||||||||||||||| || |||||||||| | ||||| ||||||||||||  || |||| ||||||||||| |||||| || |||||    
T  3476545 tctcgagtaaaattgattttgcctccagaattgatt-ctaacttaaagctaaaaattagagcttttgattctagaatttatttttacattcaaa 3476453  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 459
Target Start/End: Original strand, 2234490 - 2234576
Alignment:
Q  371 agtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    |||| |||||||||||| |  | |||||||||  ||||| |||||||||| ||||| |||| |||||||||||||||||  ||||||||    
T  2234490 agtagaattgattttgccttcaaaattgattc--aacttgaagctaaaaactgaagcttttgattctagaattgattttaacactcaaa 2234576  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 30926856 - 30926802
Alignment:
Q  405 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    ||||| |||||| |||||| || |||| |||||||||||||||||| ||||||||    
T  30926856 aacttgaagctagaaattggagttttttattctagaattgatttttacactcaaa 30926802  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 31305925 - 31305871
Alignment:
Q  405 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    ||||| ||||||||||||| || |||| |||||||||||||||| | ||||||||    
T  31305925 aacttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaa 31305871  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 459
Target Start/End: Original strand, 3515826 - 3515879
Alignment:
Q  406 actttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    |||| |||||| |||||| || ||||||||||||||||||||||| ||||||||    
T  3515826 acttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaa 3515879  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 8130851 - 8130892
Alignment:
Q  306 tgtatgtttggttccacttcaggaagagccaaaattgattct 347  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  8130851 tgtatgtttggttccacttctggaggagccaaaattgattct 8130892  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 459
Target Start/End: Original strand, 35058321 - 35058422
Alignment:
Q  356 gtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgatttttgcact 455  Q
    ||||||| | |||| |||| |||||||||||| |||||||||||||  | ||||  ||||| |||||  || |||| |||||||||||||||||  ||||    
T  35058321 gtttgatggctctcgagtagaattgattttgcctcaagaattgatt--ctacttggagctagaaattcgagcttttgattctagaattgattttaacact 35058418  T
Q  456 caaa 459  Q
    ||||    
T  35058419 caaa 35058422  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 51285577 - 51285631
Alignment:
Q  405 aactttaagctaaaaattgaagattttcattctagaattgatttttgcactcaaa 459  Q
    ||||| |||||||||||   || |||| |||||||||||||||||||||||||||    
T  51285577 aacttgaagctaaaaatcacagcttttgattctagaattgatttttgcactcaaa 51285631  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 343
Target Start/End: Complemental strand, 14307 - 14268
Alignment:
Q  304 agtgtatgtttggttccacttcaggaagagccaaaattga 343  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  14307 agtgtatgtttggttccacttttggaagagccaaaattga 14268  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 352 - 450
Target Start/End: Original strand, 32056320 - 32056416
Alignment:
Q  352 acaagtttgattggtctcaagtaaaattgattttgcatcaagaattgattcccaactttaagctaaaaattgaagattttcattctagaattgattttt 450  Q
    ||||||||| ||| |||  ||||||||||||||| | || | |||||||| | |||||||||||| |||||| || || | ||||||||||||||||||    
T  32056320 acaagtttggttgctctatagtaaaattgattttacctccataattgatt-ctaactttaagctagaaattggagcttct-attctagaattgattttt 32056416  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 30251625 - 30251670
Alignment:
Q  300 tctaagtgtatgtttggttccacttcaggaagagccaaaattgatt 345  Q
    ||||||||||||||||||||||| |  ||| |||||||||||||||    
T  30251625 tctaagtgtatgtttggttccacatttggaggagccaaaattgatt 30251670  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 15368136 - 15368177
Alignment:
Q  306 tgtatgtttggttccacttcaggaagagccaaaattgattct 347  Q
    |||||||||||||||||||  ||| |||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattct 15368177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 29922586 - 29922631
Alignment:
Q  356 gtttgattggtctcaagtaaaattgattttgcatcaagaattgatt 401  Q
    ||||||||| |||| |||| |||||||||||| |||||||||||||    
T  29922586 gtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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