View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1446_low_20 (Length: 335)

Name: NF1446_low_20
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1446_low_20
NF1446_low_20
[»] chr8 (3 HSPs)
chr8 (21-305)||(41374239-41374527)
chr8 (282-318)||(41367642-41367678)
chr8 (228-272)||(289160-289204)
[»] chr6 (4 HSPs)
chr6 (232-305)||(24985993-24986066)
chr6 (232-272)||(7649860-7649900)
chr6 (229-272)||(30732415-30732457)
chr6 (232-272)||(20703461-20703501)
[»] chr4 (4 HSPs)
chr4 (236-308)||(11045654-11045726)
chr4 (236-308)||(11047502-11047574)
chr4 (232-272)||(16412281-16412321)
chr4 (241-305)||(23208704-23208768)
[»] chr7 (2 HSPs)
chr7 (233-287)||(34564985-34565039)
chr7 (229-284)||(40364638-40364693)
[»] chr3 (3 HSPs)
chr3 (241-305)||(19674595-19674659)
chr3 (236-288)||(32711233-32711285)
chr3 (232-272)||(33068249-33068289)
[»] chr5 (2 HSPs)
chr5 (232-283)||(4409365-4409416)
chr5 (232-272)||(4409390-4409430)
[»] chr2 (1 HSPs)
chr2 (232-272)||(9002477-9002517)
[»] chr1 (2 HSPs)
chr1 (232-268)||(50155349-50155385)
chr1 (232-272)||(50155359-50155399)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 305
Target Start/End: Complemental strand, 41374527 - 41374239
Alignment:
Q  21 tgagtaaatgagaataaacaagccatttagcagtgaccacatcaatagttcatgaaaccagcaaaaagccaaaaactaataaagaacaatcatacagaga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41374527 tgagtaaatgagaataaacaagccatttagcagtgaccacatcaatagttcatgaaaccagcaaaaagccaaaaactaataaagaacaatcatacagaga 41374428  T
Q  121 atcaaaaataaatactagttcctgaaacaaaactggaatctaatgccaaatactcgtaccggcccc----taaaacttataataacctttcatcatactc 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||    
T  41374427 atcaaaaataaatacgagttcctgaaacaaaactggaatctaatgccaaatactcgtaccggcccctaattaaaacttataataacctctcatcatactc 41374328  T
Q  217 gtagcagaaacaatatatttggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 305  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41374327 gtaggagaaacaatatatttggtctataatatagatcaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 41374239  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 41367678 - 41367642
Alignment:
Q  282 aaagtgagttgtctcttataataaagacggaggtagt 318  Q
    |||||||||||||||||||||||||||||||||||||    
T  41367678 aaagtgagttgtctcttataataaagacggaggtagt 41367642  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 289204 - 289160
Alignment:
Q  228 aatatatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    ||||||||||||||||||||||||||||||| || || |||||||    
T  289204 aatatatttggtctataatatagaccaaatacattaaatattcaa 289160  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 24985993 - 24986066
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 305  Q
    |||||| |||||| ||||||||| ||| ||||||||| |||  | |||||||||||| ||||||||||||||||    
T  24985993 tatttgatctatattatagaccatatacatcaattatccaatgaacctaaaaagtgaattgtctcttataataa 24986066  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 7649860 - 7649900
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  7649860 tatttggtctaaaatatataccaaataaatcaattattcaa 7649900  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 30732457 - 30732415
Alignment:
Q  229 atatatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  30732457 atatatttggtctataat-tagaccaaatacatcaattattcaa 30732415  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 20703461 - 20703501
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    ||||||||||||||||||||||||||| || || |||||||    
T  20703461 tatttggtctataatatagaccaaatacattaaatattcaa 20703501  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 11045726 - 11045654
Alignment:
Q  236 tggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataaaga 308  Q
    ||||||||||||||||| ||||| || | ||||||||  | |||||||||||| ||||||| |||||||||||    
T  11045726 tggtctataatatagactaaatatattagttattcaatgaacctaaaaagtgaattgtctcatataataaaga 11045654  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 11047574 - 11047502
Alignment:
Q  236 tggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataaaga 308  Q
    ||||||||||||||||| ||||| || | ||||||||  | |||||||||||| ||||||| |||||||||||    
T  11047574 tggtctataatatagactaaatatattagttattcaatgaacctaaaaagtgaattgtctcatataataaaga 11047502  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 16412321 - 16412281
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  16412321 tatttggtctatattctagaccaaatatatcaattattcaa 16412281  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 23208704 - 23208768
Alignment:
Q  241 tataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 305  Q
    ||||||||||| || ||| |||| ||||||||||| |||||||| ||| || | |||||||||||    
T  23208704 tataatatagatcagatatatcagttattcaactaacctaaaaaatgaattctttcttataataa 23208768  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 34564985 - 34565039
Alignment:
Q  233 atttggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtg 287  Q
    |||||||||||||||||||||| ||| |||| |||||||| || |||||||||||    
T  34564985 atttggtctataatatagaccacatacatcacttattcaattaacctaaaaagtg 34565039  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 40364638 - 40364693
Alignment:
Q  229 atatatttggtctataatatagaccaaataaatcaattattcaactagcctaaaaa 284  Q
    ||||||||||| |||| |||||| |||||| ||||||||||||| || ||||||||    
T  40364638 atatatttggtttatattatagatcaaatacatcaattattcaattaacctaaaaa 40364693  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 19674659 - 19674595
Alignment:
Q  241 tataatatagaccaaataaatcaattattcaactagcctaaaaagtgagttgtctcttataataa 305  Q
    |||| ||||||||||||| | |||||||||||  | |||||||||||| |||||| |||||||||    
T  19674659 tatattatagaccaaatacaacaattattcaatgaacctaaaaagtgaattgtcttttataataa 19674595  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 32711285 - 32711233
Alignment:
Q  236 tggtctataatatagaccaaataaatcaattattcaactagcctaaaaagtga 288  Q
    ||||||||||||||| ||||||| |||||||||||||  | ||||||||||||    
T  32711285 tggtctataatataggccaaatacatcaattattcaatgaacctaaaaagtga 32711233  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 33068249 - 33068289
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    ||||||||||||||||||||||||||| || || |||||||    
T  33068249 tatttggtctataatatagaccaaatatattaaatattcaa 33068289  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 4409416 - 4409365
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaactagcctaaaa 283  Q
    ||||||||||||||||||||| ||||| |||||| |||||| ||| ||||||    
T  4409416 tatttggtctataatatagactaaatacatcaataattcaattagtctaaaa 4409365  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 4409390 - 4409430
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    ||||| ||||||| ||||||||||||| |||||||||||||    
T  4409390 tatttagtctatattatagaccaaatacatcaattattcaa 4409430  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 9002477 - 9002517
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    |||||| | |||||||||||||||||| |||||||||||||    
T  9002477 tatttgatatataatatagaccaaatatatcaattattcaa 9002517  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 50155385 - 50155349
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattat 268  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  50155385 tatttggtctataatatagaccaaatacatcatttat 50155349  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 50155359 - 50155399
Alignment:
Q  232 tatttggtctataatatagaccaaataaatcaattattcaa 272  Q
    ||||||||||||| ||||||||||||| |||||||| ||||    
T  50155359 tatttggtctatattatagaccaaatacatcaattactcaa 50155399  T

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