View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_21 (Length: 325)
Name: NF1446_low_21
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 35946261 - 35946560
Alignment:
| Q |
10 |
aagaatatagattcatccaagtatacatgtagcactgcttgttttatttatagtattattaggcagtgtataactttttcttgaaggaggcagtaatata |
109 |
Q |
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| T |
35946261 |
aagaatatagattcatccaagtatacatgtagcactgcttgttttatttatagtattattaggcagtgtataactttttcttgaaggaggcagtaatata |
35946360 |
T |
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| Q |
110 |
atttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattgg |
209 |
Q |
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| T |
35946361 |
atttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattgg |
35946460 |
T |
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| Q |
210 |
tatcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtattttt |
309 |
Q |
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| T |
35946461 |
tatcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtattttt |
35946560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 112 - 307
Target Start/End: Original strand, 35952508 - 35952703
Alignment:
| Q |
112 |
ttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggta |
211 |
Q |
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| T |
35952508 |
ttattatcatcacaaagagtgattaattcgcattatttaacagttaacaaagacatagttaaccgtaaggtgaccctgctggtaaccttgtccattggta |
35952607 |
T |
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| Q |
212 |
tcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtattt |
307 |
Q |
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| T |
35952608 |
tcaatttgattgaagacattcacatccaagtctaacccaccattggcacattggtccactattcttactgttgcctgagctccagttgcagtattt |
35952703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 35939408 - 35939563
Alignment:
| Q |
152 |
caattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggtatcaattcgtttgaagacattcacatctaagtcaagtccac |
251 |
Q |
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| T |
35939408 |
caattaacaaagctatagttaactgtaaggtgaccattctgaacgccctgtccattggtatcaatttgattgaagacattcacatctaagtcaagtccac |
35939507 |
T |
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| Q |
252 |
cattggcgcactgatccactattctcactgtttcctgagctccagttgcagtattt |
307 |
Q |
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| T |
35939508 |
cgttggagcattggtccactattctcactgttacctgagctccagttgcagtattt |
35939563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 35952435 - 35952499
Alignment:
| Q |
11 |
agaatatagattcatccaagtatacatgtagcactgcttgttttatttatagtattattaggcagt |
76 |
Q |
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| T |
35952435 |
agaatatatattcatccaagt-tacgtgtagcaccgcttgttttatttatggtattattagacagt |
35952499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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