View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_22 (Length: 324)
Name: NF1446_low_22
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 55174567 - 55174856
Alignment:
| Q |
16 |
atgaacagttaagagttaggaatatataaatgctttggtaaaataccttaaccatattcttttgctaccattatattagttcttaagcaatttaagtagt |
115 |
Q |
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| T |
55174567 |
atgaacagttaagtgttaggaatatataaatgttttggtaaaataccttaaccttattcttttgctaccattatattagttcttaagcaatttaagtatt |
55174666 |
T |
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| Q |
116 |
tgaagttgttaacattgtgtaaagttaaagggtatcttccatttgacttaatttccagtccaaaaccagagattttcagataaaattaattgcttagtcc |
215 |
Q |
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| T |
55174667 |
tgaagttgttaacattgtgtagagttaaagggtatcttccatttgacttaatttccagtccaaaaccagagattttcagataaaattaattgcttagtcc |
55174766 |
T |
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| Q |
216 |
tcaatggtagaacatcaatcctgtgctaccttggtcaatgcctctacattttgtgatatagaacaagaagtgaatggagataatgtcaac |
305 |
Q |
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| T |
55174767 |
tcaatggtagaacatcaatcctgtgctaccttggtcaatgcctctacattttgtgatatagaacaagaagtgaatggagataatgtcaac |
55174856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 50952792 - 50952849
Alignment:
| Q |
209 |
ttagtcctcaatggtagaacatcaatcctgtgctacc-ttggtcaatgcctctacatt |
265 |
Q |
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| T |
50952792 |
ttagtcctcaatggtagaacatcaatcatgtgctacctttggtcaatgcctctgcatt |
50952849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 55178367 - 55178418
Alignment:
| Q |
55 |
aaaataccttaaccatattcttttgctaccattatattagttcttaagcaat |
106 |
Q |
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| T |
55178367 |
aaaataccttaaccttattcttttgctaccgatatattagtttttaagcaat |
55178418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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