View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_23 (Length: 318)
Name: NF1446_low_23
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 12514631 - 12514332
Alignment:
| Q |
1 |
ggtaggaggtggtggtggatgagtcataatatacggtggaaaagaagatgggaaatttattactaactattatatcaagatttagatagaatgcaaggtt |
100 |
Q |
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| T |
12514631 |
ggtaggaggtggtggtggatgagtcataatataaggtggaaaagaagatgggaaatttattactaactattatatcaagatttagatagaatgcaaggtt |
12514532 |
T |
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| Q |
101 |
gaggttgaagttcaaatttgattaaggtagtaacaagtaaatttgattaaaatggagtgtttcttggtttgagtggtttggagttgttatggattaattt |
200 |
Q |
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| T |
12514531 |
gaggttgaagttcaaatttgattaaggtagtaataagtaaatttgattaaaatggagtgtttcttggtttgagtggtttggagttgttatggattaattt |
12514432 |
T |
|
| Q |
201 |
ctcctaagaaagttgtgagtgattacaacatttgatatactactcatactagctgacttttgaacttagagcagaacagagaaaactctcacaaaggtct |
300 |
Q |
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| T |
12514431 |
ctcctaagaaagttgtgagtgattacaacatttgatatactactcatactagctgacttttgaacttagagcagaacagagaaaactctcacaaaggtct |
12514332 |
T |
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