View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1446_low_24 (Length: 315)
Name: NF1446_low_24
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 27771563 - 27771844
Alignment:
| Q |
28 |
ttgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttaca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27771563 |
ttgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttaca |
27771662 |
T |
|
| Q |
128 |
cattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactnnnnnnngcatctccttttttgtag |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27771663 |
cattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactaaaaaaagcatctccttttttgtag |
27771762 |
T |
|
| Q |
228 |
ctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgatattcttgga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27771763 |
ctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttcttgga |
27771844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 37504077 - 37504182
Alignment:
| Q |
85 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
184 |
Q |
| |
|
||||||| |||||||||||||| | ||||||| | ||| ||||| | || |||| ||| | ||| || || |||||||| |||| ||||||||| ||||| |
|
|
| T |
37504077 |
taagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaaca |
37504176 |
T |
|
| Q |
185 |
atctgt |
190 |
Q |
| |
|
||||| |
|
|
| T |
37504177 |
ctctgt |
37504182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 12617788 - 12617922
Alignment:
| Q |
56 |
acgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatca |
155 |
Q |
| |
|
|||||| ||||||||| |||| | |||||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| |
|
|
| T |
12617788 |
acgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcg |
12617887 |
T |
|
| Q |
156 |
tcttgaaactcacttagacaaactgaacaatctgt |
190 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |
|
|
| T |
12617888 |
tcttgaaactcgtttagacaaacagaacaatctgt |
12617922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 37227861 - 37227965
Alignment:
| Q |
85 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
184 |
Q |
| |
|
||||||| |||||||||||||| | ||||||| ||||||||||| |||| |||||||||| | | ||||| |||| ||||||||| | |||||| ||||| |
|
|
| T |
37227861 |
taagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaaca |
37227960 |
T |
|
| Q |
185 |
atctg |
189 |
Q |
| |
|
||||| |
|
|
| T |
37227961 |
atctg |
37227965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 1867112 - 1867028
Alignment:
| Q |
85 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcact |
169 |
Q |
| |
|
||||||| |||||||||||| | | ||||||| |||| | |||| | ||||||||||||| | | ||||| |||| ||||||||| |
|
|
| T |
1867112 |
taagccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcact |
1867028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University