View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_28 (Length: 283)
Name: NF1446_low_28
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 31 - 268
Target Start/End: Complemental strand, 14348072 - 14347832
Alignment:
| Q |
31 |
ttcaatcatgtataataatgttgcatttcttttaagaacaattctcgacaaaaagctacagaagcaaatttggtatnnnnnnnnnnnnnnnn---tatca |
127 |
Q |
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| T |
14348072 |
ttcaatcatgtataataatgttgcatttcttttaagaacaattctcgacaaaaagctacagaggcaaatttggtatataaatatatatatatatatatca |
14347973 |
T |
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| Q |
128 |
ttttggtcctttaaaattttaaatacggtgaataagctttttcagaataaaattttgcaattaattgttcaagnnnnnnnatatcacttgcatgaagaga |
227 |
Q |
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| T |
14347972 |
ttttggtcctttaaaattttaaatacggtgaataagctttttcagaataaaattttgcaattaattggtcaagtttttttatatcacttgcatgaagaga |
14347873 |
T |
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| Q |
228 |
caaatgtagatttaaagatgtattctttttatattgttgct |
268 |
Q |
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| T |
14347872 |
caaatgtagatttaaagatgtattatttttatattgttgct |
14347832 |
T |
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