View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1446_low_29 (Length: 254)

Name: NF1446_low_29
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1446_low_29
NF1446_low_29
[»] chr4 (8 HSPs)
chr4 (1-242)||(5893507-5893748)
chr4 (21-78)||(1827851-1827908)
chr4 (21-78)||(15740992-15741049)
chr4 (13-78)||(23641894-23641959)
chr4 (13-78)||(23647552-23647617)
chr4 (13-78)||(29553104-29553169)
chr4 (1-78)||(55724998-55725075)
chr4 (14-78)||(47419576-47419640)
[»] chr2 (3 HSPs)
chr2 (84-136)||(21518438-21518490)
chr2 (23-78)||(14440516-14440571)
chr2 (21-73)||(25380705-25380757)
[»] scaffold1350 (1 HSPs)
scaffold1350 (21-78)||(316-373)
[»] chr8 (6 HSPs)
chr8 (21-78)||(20825071-20825128)
chr8 (21-78)||(17700252-17700309)
chr8 (13-73)||(7925163-7925223)
chr8 (21-73)||(9923378-9923430)
chr8 (21-73)||(13878798-13878850)
chr8 (14-78)||(26774551-26774615)
[»] chr5 (7 HSPs)
chr5 (21-78)||(8299493-8299550)
chr5 (21-78)||(10780973-10781030)
chr5 (21-78)||(23239155-23239212)
chr5 (21-78)||(28534987-28535044)
chr5 (13-78)||(30731617-30731682)
chr5 (13-69)||(26261621-26261677)
chr5 (13-73)||(42514497-42514557)
[»] chr6 (2 HSPs)
chr6 (21-73)||(17577028-17577080)
chr6 (21-73)||(13938495-13938547)
[»] chr3 (6 HSPs)
chr3 (13-69)||(52907345-52907401)
chr3 (21-78)||(962474-962531)
chr3 (13-78)||(2365050-2365115)
chr3 (13-78)||(19919532-19919597)
chr3 (21-73)||(17077608-17077660)
chr3 (21-73)||(36731670-36731722)
[»] scaffold0472 (1 HSPs)
scaffold0472 (21-78)||(4024-4081)
[»] scaffold0034 (1 HSPs)
scaffold0034 (13-78)||(105146-105211)
[»] chr7 (6 HSPs)
chr7 (1-58)||(2820012-2820069)
chr7 (21-70)||(4344630-4344679)
chr7 (13-78)||(4937431-4937496)
chr7 (21-78)||(11276559-11276616)
chr7 (21-78)||(17721407-17721464)
chr7 (21-78)||(29968746-29968803)
[»] chr1 (2 HSPs)
chr1 (13-78)||(6051375-6051440)
chr1 (21-78)||(35541806-35541863)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5893507 - 5893748
Alignment:
Q  1 tgtccatgttcgttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttgcagggggtacgtcttgtgctaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  5893507 tgtccatgttcgttccttcttcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttgcagtggatacgtcttgtgctaa 5893606  T
Q  101 aaatatcacattgttggtgttaatatattctattttcgcatattnnnnnnnttannnnnnnnnnnnnnacgtatggttttgatgatgacatttgtttctt 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||       |||              ||||||||||||||||||||||||||||||||    
T  5893607 aaatatcacattgttggtgttaatatattctatttttgcatattaaaaaaattatttttttcttttttacgtatggttttgatgatgacatttgtttctt 5893706  T
Q  201 cctcttggtgccatatagttttgttgaatgcaattttcttgg 242  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  5893707 cctcttggtgccatatagttttgttgaatgcaattttgttgg 5893748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 1827851 - 1827908
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  1827851 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 1827908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 15741049 - 15740992
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  15741049 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 15740992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 23641894 - 23641959
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  23641894 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 23641959  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 23647552 - 23647617
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  23647552 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 23647617  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 29553104 - 29553169
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| ||||||| |||||||||||||  |||||||| | || ||||||||| ||||    
T  29553104 ttccttcttcaaagctccgtcaggtataatctcttccattgaatctttatttaataaatttttttg 29553169  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 55724998 - 55725075
Alignment:
Q  1 tgtccatgttcgttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||| |||||| ||||||  |||||| ||||||  |||||||||||||  |||||||| |||| ||||||||| ||||    
T  55724998 tgtctatgttctttcctttttcaaagctccgtcgggtataatctcttccattgaatctttgttaaataaatttttttg 55725075  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 47419640 - 47419576
Alignment:
Q  14 tccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  47419640 tccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 47419576  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 21518438 - 21518490
Alignment:
Q  84 ggtacgtcttgtgctaaaaatatcacattgttggtgttaatatattctatttt 136  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  21518438 ggtacgtcttgtgctaaaaagatcacattgttgatgttaatatattcaatttt 21518490  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 14440571 - 14440516
Alignment:
Q  23 aaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||| ||||||| |||||||||||||| |||||||| |||| ||||||||| ||||    
T  14440571 aaagctccgtcaggtataatctcttctattgaatctttgttaaataaatttttttg 14440516  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 25380705 - 25380757
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    |||||| ||| ||| |||||||||||||| |||||||| | ||||||||||||    
T  25380705 tcaaagctccatcaggtataatctcttctattgaatctttattgaataaattt 25380757  T

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Target: scaffold1350 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 373 - 316
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| |||||||||||||||||||||  |||||||| |||| ||||||||| ||||    
T  373 tcaaagctccgtcaagtataatctcttcaattgaatctttgttaaataaatttttttg 316  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 20825128 - 20825071
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||| |||||||| |||| ||||||||| ||||    
T  20825128 tcaaagctccgtcaggtataatctcttctattgaatctttgtttaataaatttttttg 20825071  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 17700309 - 17700252
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| |||||||  ||||||||||||| |||||||| |||| ||||||||| ||||    
T  17700309 tcaaagctccgtcagatataatctcttctattgaatctttgttaaataaatttttttg 17700252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 7925223 - 7925163
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| |||||||||    
T  7925223 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaattt 7925163  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 9923430 - 9923378
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| |||||||||    
T  9923430 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaattt 9923378  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 13878798 - 13878850
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| |||||||||    
T  13878798 tcaaagctccgtcaggtataatctcttccattgaatctttgttaaataaattt 13878850  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 26774551 - 26774615
Alignment:
Q  14 tccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| |||||| ||||||| |||||||||||||| |||||| | | || ||||||||| ||||    
T  26774551 tccttcttcaaagctccgtcatgtataatctcttctattgaatatcttttaaataaatttttttg 26774615  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 8299493 - 8299550
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||| |||||||| |||| ||||||||| ||||    
T  8299493 tcaaagctccgtcaggtataatctcttctattgaatctttgtttaataaatttttttg 8299550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 10781030 - 10780973
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||| |||||||| |||| ||||||||| ||||    
T  10781030 tcaaagctccgtcaggtataatctcttctattgaatctttgttaaataaatttttttg 10780973  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 23239212 - 23239155
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  23239212 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 23239155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 28534987 - 28535044
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  28534987 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 28535044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 30731617 - 30731682
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  30731617 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 30731682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 26261621 - 26261677
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataa 69  Q
    ||||||| |||||| ||| ||| |||||||||||||| |||||| ||| ||||||||    
T  26261621 ttccttcttcaaagctccttcaggtataatctcttctattgaatttattttgaataa 26261677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 42514557 - 42514497
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| |||||||||    
T  42514557 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaattt 42514497  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 17577028 - 17577080
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    |||||| ||||||| |||||||||||||| |||||||| |||| |||||||||    
T  17577028 tcaaagctccgtcaggtataatctcttctattgaatctttgtttaataaattt 17577080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 13938547 - 13938495
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| |||||||||    
T  13938547 tcaaagctccgtcaggtataatctcttccattgaatctttgttaaataaattt 13938495  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 52907345 - 52907401
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataa 69  Q
    ||||||| |||||| ||| ||| |||||||||||||| ||||||||||||| |||||    
T  52907345 ttccttcttcaaagctccatcaggtataatctcttctattgaatctatgtttaataa 52907401  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 962474 - 962531
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  962474 tcaaagctccgtcaggtataatctcttccattgaatctttgttaaataaatttttttg 962531  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 2365115 - 2365050
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  2365115 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 2365050  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 19919532 - 19919597
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  19919532 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 19919597  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 17077608 - 17077660
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    |||||| || |||| |||||||||||||  |||||||| ||||||||||||||    
T  17077608 tcaaagctctgtcaggtataatctcttccattgaatctttgttgaataaattt 17077660  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 36731722 - 36731670
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaattt 73  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| |||||||||    
T  36731722 tcaaagctccgtcaggtataatctcttccattgaatctttgttaaataaattt 36731670  T

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Target: scaffold0472 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 4081 - 4024
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  4081 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 4024  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 105146 - 105211
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  105146 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 105211  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 2820012 - 2820069
Alignment:
Q  1 tgtccatgttcgttccttcatcaaagttccgtcaagtataatctcttctcttgaatct 58  Q
    |||| |||||| ||||||| ||||||  |||||| |||||||||||||| ||||||||    
T  2820012 tgtctatgttctttccttcttcaaagccccgtcaggtataatctcttctattgaatct 2820069  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 4344679 - 4344630
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaa 70  Q
    |||||| ||| ||| |||||||||||||| ||||||||||||| ||||||    
T  4344679 tcaaagctccctcatgtataatctcttctattgaatctatgtttaataaa 4344630  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 4937431 - 4937496
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  4937431 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 4937496  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 11276559 - 11276616
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  11276559 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 11276616  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 17721464 - 17721407
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  17721464 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 17721407  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 29968803 - 29968746
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  29968803 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 29968746  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 6051440 - 6051375
Alignment:
Q  13 ttccttcatcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    ||||||| |||||| |||| || |||||||||||||  |||||||| |||| ||||||||| ||||    
T  6051440 ttccttcttcaaagctccgacaggtataatctcttccattgaatctttgtttaataaatttttttg 6051375  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 35541863 - 35541806
Alignment:
Q  21 tcaaagttccgtcaagtataatctcttctcttgaatctatgttgaataaatttgtttg 78  Q
    |||||| ||||||| |||||||||||||  |||||||| |||| ||||||||| ||||    
T  35541863 tcaaagctccgtcaggtataatctcttccattgaatctttgtttaataaatttttttg 35541806  T

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