View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_33 (Length: 243)
Name: NF1446_low_33
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 4953315 - 4953532
Alignment:
| Q |
9 |
agcagagaactaaatcaatatatgttgtatgcttctatatgcaatttaaaaccaaattattagcacctaaaaatagtgcttgtgtcaatcctatataaga |
108 |
Q |
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| T |
4953315 |
agcagtgaactaaatcaatatatgttgtatgcttctatatgcaatttaaaaccaaattattagcacctaaaaatagtgcttgtgtcaatcctatataaga |
4953414 |
T |
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| Q |
109 |
gctgtttatcttggggtccctacccattacataagcaattttgaaaattaaaaactcttagaactaataatttcttatgatatatgacggcatgaagacc |
208 |
Q |
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| T |
4953415 |
gttgtttatcttggggtccctacccattacataagcaattttgaaaattaaaaactcttagaactaataatttcttatgatatatgacggcatgaagacc |
4953514 |
T |
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| Q |
209 |
agtttaaaagggttcctt |
226 |
Q |
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| T |
4953515 |
agtttaaaagggttcctt |
4953532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 10481574 - 10481442
Alignment:
| Q |
89 |
tgtgtcaatcctatataagagctgtttatcttggggtccctaccca-ttacataagcaattttgaaaattaaaaactcttagaactaataatttcttatg |
187 |
Q |
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| T |
10481574 |
tgtgtcaatcctacagaagagttgtttatcctggggtctctacccaatttcataaacaattttgaaaataaaaaactcttagaaccaataattccttatg |
10481475 |
T |
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| Q |
188 |
atatatgacggcatgaagaccagtttaaaaggg |
220 |
Q |
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| T |
10481474 |
atagatgacggcatgaagaccagtttaaaaggg |
10481442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 10482057 - 10482016
Alignment:
| Q |
45 |
atatgcaatttaaaaccaaattattagcacctaaaaatagtg |
86 |
Q |
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| T |
10482057 |
atatgcaatttaaaaccaatttattagcacctaaaaatagtg |
10482016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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