View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_36 (Length: 237)
Name: NF1446_low_36
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 38021987 - 38021809
Alignment:
| Q |
1 |
ttagaatgctgttgtgctgatcttataacactgttccatctgcatattccttgatccttcaaagcctccaccactccaacacttgttgccacactccatt |
100 |
Q |
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| T |
38021987 |
ttagaatgctgttgtgctgatcttataacactgttccatctgcatattccttgatccttcaaagcctccaccactccaacacttgttgccacactccatt |
38021888 |
T |
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| Q |
101 |
tccatgcttggcttcttgaactcattgtattaattgttaagaagaaaggtagagttaagcaatttgatattgattaatg |
179 |
Q |
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| T |
38021887 |
tccatgcttggcttcttgaactcattgtattaattgttaagaagaaaggtagtgttaagcaatttgatattgattaatg |
38021809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 38033883 - 38033749
Alignment:
| Q |
1 |
ttagaatgctgttgtgctgatcttataacactgttccatctgcatattccttgatccttcaaagcctccaccactccaacacttgttgccacactccatt |
100 |
Q |
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| T |
38033883 |
ttagcatgttgttgtgctgatcttataacactgttccatctgcatattccttgatctttcaaagcctccacaactccaacacttgttgccacactccacg |
38033784 |
T |
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| Q |
101 |
tccatgcttggcttcttgaactcattgtattaatt |
135 |
Q |
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| T |
38033783 |
tccaagctcggcttcttgaactcattgtattaatt |
38033749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 38019239 - 38019190
Alignment:
| Q |
34 |
ttccatctgcatattccttgatccttcaaagcctccaccactccaacact |
83 |
Q |
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| T |
38019239 |
ttccatctgcatattccttgatcctttaatgcttccacaactgcaacact |
38019190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 37993539 - 37993499
Alignment:
| Q |
49 |
ccttgatccttcaaagcctccaccactccaacacttgttgc |
89 |
Q |
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| T |
37993539 |
ccttgatccttcaatgtctccaccaatccaacacttgttgc |
37993499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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