View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_43 (Length: 218)
Name: NF1446_low_43
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 49861833 - 49862016
Alignment:
| Q |
18 |
gatcaagcggtcgaatgcgcggtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgta |
117 |
Q |
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| T |
49861833 |
gatcaagcggtggaatgcgctgtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgta |
49861932 |
T |
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| Q |
118 |
ttgatatgtggtttcagtctcattctacatgtccgctttgtagagcgcccgtggaggctgcgccggttcaagcgaccagacaag |
201 |
Q |
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| T |
49861933 |
ttgatatgtggtttcagtctcattctacatgtccgctttgtagagcgcccgtggaggctgcgccggttcaagcgaccagacaag |
49862016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 13998998 - 13998859
Alignment:
| Q |
30 |
gaatgcgcggtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgtattgatatgtggt |
129 |
Q |
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| T |
13998998 |
gaatgtgctgtttgtttgtcggaatttgaatccggtgaaacgggtcgggttttacccaaatgcaaacatagttttcatactgagtgtattgatatgtggt |
13998899 |
T |
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| Q |
130 |
ttcagtctcattctacatgtccgctttgtagagcgcccgt |
169 |
Q |
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| T |
13998898 |
ttcattctcatgacacgtgtcctctttgtcgggcgcccgt |
13998859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 8434469 - 8434388
Alignment:
| Q |
79 |
ttttacccaaatgtaatcatagttttcatattgattgtattgatatgtggtttcagtctcattctacatgtccgctttgtag |
160 |
Q |
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| T |
8434469 |
ttttaccaaaatgcaatcatgggtttcatttagattgtattgatatgtggtttcaatctcattctacttgtcctctttgtag |
8434388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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