View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1446_low_8 (Length: 456)

Name: NF1446_low_8
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1446_low_8
NF1446_low_8
[»] chr1 (13 HSPs)
chr1 (16-190)||(38884929-38885109)
chr1 (381-441)||(38884877-38884937)
chr1 (312-381)||(39249984-39250055)
chr1 (312-380)||(46901856-46901926)
chr1 (329-380)||(34307278-34307329)
chr1 (312-383)||(19258793-19258866)
chr1 (329-376)||(2509028-2509075)
chr1 (329-375)||(10146971-10147017)
chr1 (186-246)||(34307132-34307192)
chr1 (186-246)||(28647490-28647549)
chr1 (329-380)||(28647353-28647404)
chr1 (193-246)||(19258674-19258726)
chr1 (193-241)||(39249864-39249911)
[»] chr3 (23 HSPs)
chr3 (312-380)||(29460660-29460730)
chr3 (312-380)||(29471512-29471582)
chr3 (312-380)||(34750019-34750089)
chr3 (312-380)||(38231293-38231363)
chr3 (312-383)||(51339904-51339975)
chr3 (329-380)||(22894680-22894731)
chr3 (314-383)||(36370461-36370532)
chr3 (329-383)||(21559558-21559612)
chr3 (329-383)||(30735635-30735689)
chr3 (312-381)||(39072394-39072465)
chr3 (329-381)||(43999988-44000040)
chr3 (312-372)||(20856272-20856334)
chr3 (191-246)||(38231429-38231484)
chr3 (329-382)||(36749404-36749457)
chr3 (312-383)||(46112065-46112138)
chr3 (335-382)||(50966129-50966175)
chr3 (335-382)||(51069264-51069310)
chr3 (314-381)||(39467224-39467293)
chr3 (189-246)||(30735493-30735549)
chr3 (312-377)||(48200688-48200755)
chr3 (190-238)||(51339782-51339829)
chr3 (327-373)||(29820437-29820483)
chr3 (190-246)||(29472946-29473001)
[»] chr2 (16 HSPs)
chr2 (312-383)||(3831018-3831089)
chr2 (312-380)||(33732569-33732639)
chr2 (312-380)||(36315561-36315631)
chr2 (312-377)||(44958116-44958183)
chr2 (329-383)||(16089819-16089873)
chr2 (191-254)||(37914236-37914299)
chr2 (312-383)||(37914357-37914430)
chr2 (312-380)||(6376354-6376424)
chr2 (329-382)||(14572993-14573046)
chr2 (190-246)||(36315698-36315754)
chr2 (189-243)||(33732709-33732762)
chr2 (181-246)||(16089958-16090022)
chr2 (194-246)||(3830900-3830951)
chr2 (190-246)||(37498861-37498917)
chr2 (333-380)||(24137240-24137287)
chr2 (312-381)||(37498986-37499057)
[»] chr6 (5 HSPs)
chr6 (329-383)||(3987045-3987099)
chr6 (312-380)||(14022934-14023004)
chr6 (312-382)||(15345780-15345850)
chr6 (329-382)||(3118187-3118240)
chr6 (351-382)||(7674598-7674629)
[»] chr4 (21 HSPs)
chr4 (329-383)||(28093236-28093290)
chr4 (312-382)||(46192357-46192429)
chr4 (312-380)||(49243815-49243885)
chr4 (329-382)||(21391095-21391148)
chr4 (312-381)||(6112629-6112700)
chr4 (329-380)||(3672274-3672325)
chr4 (191-245)||(46192497-46192551)
chr4 (312-382)||(7217763-7217835)
chr4 (312-380)||(45829378-45829448)
chr4 (188-249)||(45829254-45829314)
chr4 (186-246)||(44275843-44275902)
chr4 (327-382)||(35544910-35544965)
chr4 (329-382)||(44275704-44275757)
chr4 (191-245)||(49243953-49244006)
chr4 (189-240)||(7217909-7217959)
chr4 (191-246)||(21390955-21391009)
chr4 (334-376)||(43245522-43245564)
chr4 (193-246)||(35545050-35545102)
chr4 (329-382)||(52191340-52191393)
chr4 (343-383)||(25437039-25437079)
chr4 (189-241)||(28093093-28093144)
[»] chr7 (29 HSPs)
chr7 (329-381)||(26972343-26972395)
chr7 (317-380)||(34108426-34108491)
chr7 (312-382)||(36346685-36346757)
chr7 (329-381)||(7700617-7700669)
chr7 (312-380)||(15020282-15020350)
chr7 (329-380)||(7700023-7700074)
chr7 (329-380)||(7700221-7700272)
chr7 (329-380)||(7700419-7700470)
chr7 (312-380)||(13108148-13108218)
chr7 (329-380)||(28307635-28307686)
chr7 (329-380)||(42221103-42221154)
chr7 (329-383)||(31148287-31148341)
chr7 (312-374)||(23980137-23980201)
chr7 (327-380)||(30887700-30887753)
chr7 (329-376)||(21807462-21807509)
chr7 (312-380)||(5811284-5811354)
chr7 (329-380)||(45782800-45782851)
chr7 (191-240)||(36346564-36346612)
chr7 (189-241)||(26972200-26972251)
chr7 (179-235)||(29953559-29953614)
chr7 (188-246)||(13108284-13108341)
chr7 (314-372)||(28713685-28713746)
chr7 (312-375)||(38321014-38321079)
chr7 (188-241)||(28307491-28307543)
chr7 (342-375)||(42950156-42950189)
chr7 (190-246)||(5811162-5811217)
chr7 (329-377)||(34828069-34828116)
chr7 (318-359)||(36957450-36957493)
chr7 (190-246)||(46475162-46475217)
[»] chr8 (14 HSPs)
chr8 (312-380)||(36189216-36189286)
chr8 (329-379)||(44081781-44081831)
chr8 (331-380)||(42162598-42162647)
chr8 (329-377)||(12665347-12665395)
chr8 (329-380)||(30432339-30432390)
chr8 (329-383)||(10203661-10203715)
chr8 (312-383)||(33726008-33726081)
chr8 (313-382)||(18184551-18184622)
chr8 (329-381)||(31318804-31318856)
chr8 (312-381)||(43186026-43186097)
chr8 (314-372)||(11904861-11904922)
chr8 (190-240)||(36189358-36189407)
chr8 (191-240)||(10203808-10203856)
chr8 (189-246)||(18184690-18184746)
[»] chr5 (20 HSPs)
chr5 (329-381)||(13347127-13347179)
chr5 (312-380)||(2237276-2237346)
chr5 (329-380)||(39370927-39370978)
chr5 (329-383)||(40888082-40888136)
chr5 (312-382)||(1815737-1815809)
chr5 (312-380)||(19596188-19596258)
chr5 (329-380)||(33404576-33404627)
chr5 (329-369)||(14831555-14831595)
chr5 (312-383)||(4300664-4300737)
chr5 (329-382)||(27553513-27553566)
chr5 (329-381)||(9408179-9408231)
chr5 (189-241)||(40887939-40887990)
chr5 (314-381)||(17225318-17225385)
chr5 (191-246)||(19596067-19596122)
chr5 (312-371)||(41003970-41004031)
chr5 (191-241)||(2237419-2237468)
chr5 (189-243)||(31800698-31800751)
chr5 (191-241)||(39371070-39371119)
chr5 (191-240)||(13347272-13347320)
chr5 (188-241)||(14831687-14831739)
[»] scaffold0062 (1 HSPs)
scaffold0062 (329-376)||(6722-6769)
[»] scaffold0043 (2 HSPs)
scaffold0043 (312-376)||(87285-87350)
scaffold0043 (190-246)||(87161-87216)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 38885109 - 38884929
Alignment:
Q  16 ggtcggaaaagtaatgctcaaattgttaatggata------tgttagcagctgggatccaacgcgacattcaacatagaactacttcgatatcttaactc 109  Q
    |||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38885109 ggtcggaaaagtaatgcttaaattgttaatggatggtaaactgttagcagctgggatccaacgcgacattcaacatagaactccttcgatatcttaactc 38885010  T
Q  110 aaaaatcgctaagctactcattcggtgtctaagataaacctcatcaactttgacatagattcatattcttgttttcataaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38885009 aaaaatcgctaagctactcattcggtgtctaagataaacctcatcaactttgacatagattcatattcttgttttgataaa 38884929  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 38884937 - 38884877
Alignment:
Q  381 tttgataaaaatgttttcaatgaattcattcggggaatacattcataatatacaacgaagt 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38884937 tttgataaaaatgttttcaatgaattcattcggggaatacattcataatatacaatgaagt 38884877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 39249984 - 39250055
Alignment:
Q  312 gccacatgtcacaaatatgt--gggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    ||||| |||||||||| |||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39249984 gccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctct 39250055  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 46901856 - 46901926
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||| |||||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  46901856 gccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 34307278 - 34307329
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  34307278 tgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 19258793 - 19258866
Alignment:
Q  312 gccacatgtcacaaatat--gtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||| || ||||| |||||||| ||||||||    
T  19258793 gccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctcttt 19258866  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 2509075 - 2509028
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 376  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  2509075 tgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 10147017 - 10146971
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 375  Q
    |||||| || |||||||||||||||||||||||||| ||||||||||    
T  10147017 tgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 34307132 - 34307192
Alignment:
Q  186 ataaaggaaaaagatatgtagacacccttctttgatacacctcttatgtacac-cccatgtg 246  Q
    |||||||||||||||| ||||||| |||| ||| ||||||||||||||||||| ||||||||    
T  34307132 ataaaggaaaaagataggtagaca-ccttttttcatacacctcttatgtacactcccatgtg 34307192  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 28647549 - 28647490
Alignment:
Q  186 ataaaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||||||||||| |||||||||||| ||| ||||| |||| ||||||| ||||||||    
T  28647549 ataaaggaaaaagataggtagacaccctt-ttttatacatctctcatgtacatcccatgtg 28647490  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 28647404 - 28647353
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||| | ||||||| |||| ||||||||||||||||| |||||    
T  28647404 tgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 19258674 - 19258726
Alignment:
Q  193 aaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    ||||||||| |||||||||||| ||| ||||| |||| ||||||||||||||||    
T  19258674 aaaaagataggtagacaccctttttt-atacatctctcatgtacaccccatgtg 19258726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 39249864 - 39249911
Alignment:
Q  193 aaaaagatatgtagacacccttctttgatacacctcttatgtacacccc 241  Q
    ||||||||| ||||||||| || ||| ||||||||||||||||||||||    
T  39249864 aaaaagataggtagacaccttt-tttcatacacctcttatgtacacccc 39249911  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 29460730 - 29460660
Alignment:
Q  312 gccacatgtcacaaa--tatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29460730 gccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 29471582 - 29471512
Alignment:
Q  312 gccacatgtcacaaa--tatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29471582 gccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 34750019 - 34750089
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34750019 gccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 38231363 - 38231293
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38231363 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 51339904 - 51339975
Alignment:
Q  312 gccacatgtcacaaatatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  51339904 gccacgtgtcacaaatgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctcttt 51339975  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 22894731 - 22894680
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894731 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 36370461 - 36370532
Alignment:
Q  314 cacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||||||||| ||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  36370461 cacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctcttt 36370532  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 21559612 - 21559558
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  21559612 tgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctcttt 21559558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 30735635 - 30735689
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  30735635 tgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctcttt 30735689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 39072394 - 39072465
Alignment:
Q  312 gccacatgtcacaaat--atgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    ||||||||||||||||  ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||    
T  39072394 gccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctct 39072465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 44000040 - 43999988
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  44000040 tgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 43999988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 20856272 - 20856334
Alignment:
Q  312 gccacatgtcacaaatatgt--gggtgtaaaagggtgtatgccacctaaggtggttcatgtat 372  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||    
T  20856272 gccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 38231484 - 38231429
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtg 38231429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 36749457 - 36749404
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  36749457 tgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctctt 36749404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 46112065 - 46112138
Alignment:
Q  312 gccacatgtcacaaatatgtggg--tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||||||||||| |||| |  ||||||| |||||||| |||||||| |||||||||||||||| ||||||    
T  46112065 gccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataagaactcttt 46112138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 50966175 - 50966129
Alignment:
Q  335 tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  50966175 tgtaaaagggtgtatgccacctaagat-gttcatgtataagagctctt 50966129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 51069310 - 51069264
Alignment:
Q  335 tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  51069310 tgtaaaagggtgtatgccacctaagat-gttcatgtataagagctctt 51069264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 39467224 - 39467293
Alignment:
Q  314 cacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    |||||||||||||||||||  |||||||||||||||||| || ||| ||||||| ||| |||| ||||||    
T  39467224 cacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctct 39467293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 30735493 - 30735549
Alignment:
Q  189 aaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    ||||||||||||| |||||||||||| ||| ||||||| ||||||||||| |||||||    
T  30735493 aaggaaaaagataggtagacaccctt-tttcatacaccacttatgtacactccatgtg 30735549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 48200755 - 48200688
Alignment:
Q  312 gccacatgtcacaaatat--gtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 377  Q
    ||||| ||||||||||||  |||| ||||||| ||||||||||||||||| || |||||| |||||||    
T  48200755 gccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 51339782 - 51339829
Alignment:
Q  190 aggaaaaagatatgtagacacccttctttgatacacctcttatgtacac 238  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||||    
T  51339782 aggaaaaagataggtagacaccctt-tttcatacacctcttatgtacac 51339829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 29820437 - 29820483
Alignment:
Q  327 tatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtata 373  Q
    ||||||||||| |||| |||||||||||||||||||||  |||||||    
T  29820437 tatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 29473001 - 29472946
Alignment:
Q  190 aggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||||||| ||||||| |||| ||| ||||||| |||||| ||||||||||||    
T  29473001 aggaaaaagataggtagacatcctt-tttcatacaccacttatgcacaccccatgtg 29472946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 3831018 - 3831089
Alignment:
Q  312 gccacatgtcacaaatatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  3831018 gccacgtgtcacaaatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctcttt 3831089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 33732639 - 33732569
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33732639 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 36315631 - 36315561
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315631 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 44958183 - 44958116
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 377  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  44958183 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 16089873 - 16089819
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16089873 tgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctcttt 16089819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 37914236 - 37914299
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtgccaaggta 254  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  37914236 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccagggta 37914299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 37914357 - 37914430
Alignment:
Q  312 gccacatgtcacaaatatgtggg--tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||||||||||| |||| |  ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  37914357 gccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctcttt 37914430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 6376354 - 6376424
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  6376354 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 14573046 - 14572993
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  14573046 tgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagagctctt 14572993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 36315754 - 36315698
Alignment:
Q  190 aggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||    
T  36315754 aggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtg 36315698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 33732762 - 33732709
Alignment:
Q  189 aaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccat 243  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  33732762 aaggaaaaagataggtagacaccctt-tttcatacacctcttatgtacaccccat 33732709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 16090022 - 16089958
Alignment:
Q  181 ttttcataaaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||  |||||||||||| ||||||||| || ||| |||||||||||||||||||||||||||    
T  16090022 ttttcatttaggaaaaagataggtagacaccttt-tttcatacacctcttatgtacaccccatgtg 16089958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 3830900 - 3830951
Alignment:
Q  194 aaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  3830900 aaaagataggtagacaccctt-tttcatacacctcttatgtacaccccatgtg 3830951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 37498861 - 37498917
Alignment:
Q  190 aggaaaaagatatgtagacacccttctttgatacacctcttatgtaca-ccccatgtg 246  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||| |||||||||    
T  37498861 aggaaaaagataggtagacaccctt-ttttatacacctcttatgtacatccccatgtg 37498917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 24137240 - 24137287
Alignment:
Q  333 ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||| ||||||||||| ||||||||||||||| |||||||| |||||    
T  24137240 ggtgtcaaagggtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 37498986 - 37499057
Alignment:
Q  312 gccacatgtcacaaatatgtggg--tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    |||||||||||||||| |||| |  ||||||||| |||||||||  |||| ||||| || ||||||||||||    
T  37498986 gccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctct 37499057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 3987045 - 3987099
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3987045 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 3987099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 14023004 - 14022934
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  14023004 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 15345780 - 15345850
Alignment:
Q  312 gccacatgtcacaaatatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||| |||||||||| | |||||||||||| || ||||||||||||||||||| ||||||||||||||||    
T  15345780 gccacgtgtcacaaatgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctctt 15345850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 3118187 - 3118240
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3118187 tgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctctt 3118240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 382
Target Start/End: Original strand, 7674598 - 7674629
Alignment:
Q  351 ccacctaaggtggttcatgtataagagctctt 382  Q
    ||||||||||||||||||||||||||||||||    
T  7674598 ccacctaaggtggttcatgtataagagctctt 7674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 28093236 - 28093290
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093236 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 28093290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 46192429 - 46192357
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46192429 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctctt 46192357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 49243885 - 49243815
Alignment:
Q  312 gccacatgtcacaaatatgtggg--tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  49243885 gccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 21391095 - 21391148
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21391095 tgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctctt 21391148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 6112700 - 6112629
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    ||||| |||||||||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  6112700 gccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctct 6112629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 3672325 - 3672274
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3672325 tgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 46192551 - 46192497
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgt 245  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgt 46192497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 7217835 - 7217763
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||| |||||||||| ||||  ||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  7217835 gccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctctt 7217763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 45829378 - 45829448
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||||  ||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  45829378 gccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 45829254 - 45829314
Alignment:
Q  188 aaaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtgcca 249  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||    
T  45829254 aaaggaaaaagataggtagacacccttttttgatacacct-ttatgtacaccccatatgcca 45829314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 44275902 - 44275843
Alignment:
Q  186 ataaaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||    
T  44275902 ataaaggaaaaagatagatagacaccctt-tttcatacacctcttatgtacaccccatgtg 44275843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 35544965 - 35544910
Alignment:
Q  327 tatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  35544965 tatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctctt 35544910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 44275757 - 44275704
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    |||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  44275757 tgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctctt 44275704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 49244006 - 49243953
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgt 245  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||    
T  49244006 ggaaaaagatatgtagacatcctt-tttcatacacctcttatgtacactccatgt 49243953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 7217959 - 7217909
Alignment:
Q  189 aaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccc 240  Q
    ||||||||||||| ||| |||||||| ||| |||||||||||||||||||||    
T  7217959 aaggaaaaagataggtaaacaccctt-tttcatacacctcttatgtacaccc 7217909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 21390955 - 21391009
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    ||||||||||| |||||||||||| ||| |||||||| ||||||||||| ||||||    
T  21390955 ggaaaaagataggtagacaccctt-tttcatacaccttttatgtacacctcatgtg 21391009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 43245564 - 43245522
Alignment:
Q  334 gtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 376  Q
    ||||||||||||||||| || ||||| ||||||||||||||||    
T  43245564 gtgtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 35545102 - 35545050
Alignment:
Q  193 aaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    ||||||||| |||||||||||| ||| ||||||| ||||||||||| |||||||    
T  35545102 aaaaagataggtagacaccctt-tttcatacaccacttatgtacactccatgtg 35545050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 52191340 - 52191393
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||| ||| ||| ||| |||||||||||||||||| |||||||||| ||||||    
T  52191340 tgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctctt 52191393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 383
Target Start/End: Original strand, 25437039 - 25437079
Alignment:
Q  343 ggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||| ||||||||||||| |||||||||| |||||||    
T  25437039 ggtgtatgtcacctaaggtggtccatgtataagggctcttt 25437079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 28093093 - 28093144
Alignment:
Q  189 aaggaaaaagatatgtagacacccttctttgatacacctcttatgtacacccc 241  Q
    ||||||||||||| ||||||| |||| ||| |||||| |||||||||||||||    
T  28093093 aaggaaaaagataggtagacatcctt-tttcatacacttcttatgtacacccc 28093144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 26972343 - 26972395
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26972343 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 26972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 34108491 - 34108426
Alignment:
Q  317 atgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  34108491 atgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 36346685 - 36346757
Alignment:
Q  312 gccacatgtcacaaatatgt--gggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||| |||||||||| |||  |||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  36346685 gccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctctt 36346757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 7700617 - 7700669
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  7700617 tgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctct 7700669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 15020350 - 15020282
Alignment:
Q  312 gccacatgtcacaaatatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||| |||||    
T  15020350 gccatatgtcacaaatgtgtgggtgtaaaaggttgtatgccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 7700023 - 7700074
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  7700023 tgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 7700221 - 7700272
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  7700221 tgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 7700419 - 7700470
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  7700419 tgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 13108218 - 13108148
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||||  |||||||||||||||||||| |||||||||||| |||||||| |||||    
T  13108218 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 28307635 - 28307686
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  28307635 tgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 42221103 - 42221154
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  42221103 tgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 31148341 - 31148287
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  31148341 tgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaaagcccttt 31148287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 23980201 - 23980137
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 374  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||| ||||||||    
T  23980201 gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 30887753 - 30887700
Alignment:
Q  327 tatgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  30887753 tatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 21807462 - 21807509
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 376  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  21807462 tgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 5811284 - 5811354
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||||  |||| |||||| ||||||||||||| ||||||| |||||||| |||||    
T  5811284 gccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 45782800 - 45782851
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  45782800 tgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 36346564 - 36346612
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccc 240  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  36346564 ggaaaaagataggtagacaccctt-tttcatacacctcttatgtacaccc 36346612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 26972200 - 26972251
Alignment:
Q  189 aaggaaaaagatatgtagacacccttctttgatacacctcttatgtacacccc 241  Q
    ||||||||||||| |||||||||||| ||| |||||| |||||||||||||||    
T  26972200 aaggaaaaagataggtagacaccctt-tttcatacacttcttatgtacacccc 26972251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 29953559 - 29953614
Alignment:
Q  179 tgttttcataaaggaaaaagatatgtagacacccttctttgatacacctcttatgta 235  Q
    |||||||| |||||||||||||| |||||||||||| ||| |||||| |||||||||    
T  29953559 tgttttcaaaaaggaaaaagataggtagacaccctt-tttcatacacttcttatgta 29953614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 13108341 - 13108284
Alignment:
Q  188 aaaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||||||||| |||||||||||| ||| |||||||| | ||||||||| ||||||    
T  13108341 aaaggaaaaagataggtagacaccctt-ttttatacacctttcatgtacacctcatgtg 13108284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 28713746 - 28713685
Alignment:
Q  314 cacatgtcacaa--atatgtgggtgtaaaag-ggtgtatgccacctaaggtggttcatgtat 372  Q
    ||||||||||||  ||||||||||||| ||| ||| ||||||||||||||||||| ||||||    
T  28713746 cacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtat 28713685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 38321079 - 38321014
Alignment:
Q  312 gccacatgtcacaaat--atgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 375  Q
    |||||||||||||| |  |||||||||| |||  |||||||||||||||| ||||| |||||||||    
T  38321079 gccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 28307491 - 28307543
Alignment:
Q  188 aaaggaaaaagatatgtagacacccttctttgatacacctcttatgtacacccc 241  Q
    |||||||||||||| ||||||| | || ||| ||||||||||||||||||||||    
T  28307491 aaaggaaaaagataggtagacatcttt-tttcatacacctcttatgtacacccc 28307543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 375
Target Start/End: Original strand, 42950156 - 42950189
Alignment:
Q  342 gggtgtatgccacctaaggtggttcatgtataag 375  Q
    ||||||||||||||||||||||||||||| ||||    
T  42950156 gggtgtatgccacctaaggtggttcatgtctaag 42950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 5811162 - 5811217
Alignment:
Q  190 aggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||||||| |||||||||||| ||| |||||||||  ||||||||| ||||||    
T  5811162 aggaaaaagataggtagacaccctt-ttttatacacctcccatgtacacctcatgtg 5811217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 34828116 - 34828069
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 377  Q
    ||||| ||||||||| ||||||| ||| |||||||||||||||||||||    
T  34828116 tgtggatgtaaaaggatgtatgc-acccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 36957493 - 36957450
Alignment:
Q  318 tgtcacaaatatgt--gggtgtaaaagggtgtatgccacctaag 359  Q
    ||||||||||||||  || |||||||||||||||||||||||||    
T  36957493 tgtcacaaatatgtatggatgtaaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 46475217 - 46475162
Alignment:
Q  190 aggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||||||| |||||||||||| ||| |||||||||| ||||||| | ||||||    
T  46475217 aggaaaaagataggtagacaccctt-ttttatacacctctcatgtacatctcatgtg 46475162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 36189286 - 36189216
Alignment:
Q  312 gccacatgtcacaaat--atgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36189286 gccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 44081831 - 44081781
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagct 379  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44081831 tgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 42162647 - 42162598
Alignment:
Q  331 tgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42162647 tgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 12665395 - 12665347
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 377  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12665395 tgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 30432390 - 30432339
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  30432390 tgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 10203715 - 10203661
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||    
T  10203715 tgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactcttt 10203661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 33726081 - 33726008
Alignment:
Q  312 gccacatgtcacaaatat--gtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||||||||||| |  |||||||||||| |||||||||||||||| |||||| |||||||| | ||||||    
T  33726081 gccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataacaactcttt 33726008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 18184622 - 18184551
Alignment:
Q  313 ccacatgtcacaaatatgtggg--tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    |||| ||||||||||||||| |  |||||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  18184622 ccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagagttctt 18184551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 31318856 - 31318804
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    ||||| ||||||| | | |||||||||||||||||||||||||||||||||||    
T  31318856 tgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctct 31318804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 43186097 - 43186026
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    ||||||| |||||||| ||||  |||||||||| || |||||||||||| |||||| |||||||||| ||||    
T  43186097 gccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataagaactct 43186026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 11904922 - 11904861
Alignment:
Q  314 cacatgtcacaa--atatgtgggtgtaaaag-ggtgtatgccacctaaggtggttcatgtat 372  Q
    ||||||||||||  ||||||||||||| ||| ||| ||||||||||||||||||| ||||||    
T  11904922 cacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtat 11904861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 36189407 - 36189358
Alignment:
Q  190 aggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccc 240  Q
    |||||||||||| |||||||||||| ||| ||||||| |||||||||||||    
T  36189407 aggaaaaagataggtagacaccctt-tttcatacaccacttatgtacaccc 36189358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 10203856 - 10203808
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccc 240  Q
    ||||||||||| |||||||||||| ||| ||||| |||||||||||||||    
T  10203856 ggaaaaagataggtagacaccctt-tttcatacatctcttatgtacaccc 10203808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 18184746 - 18184690
Alignment:
Q  189 aaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    ||||||||||||| ||||||| |||| ||| |||||||| ||||||||||| ||||||    
T  18184746 aaggaaaaagataggtagacatcctt-tttcatacaccttttatgtacacctcatgtg 18184690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 13347179 - 13347127
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13347179 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctct 13347127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 2237346 - 2237276
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||| |||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  2237346 gccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 39370978 - 39370927
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39370978 tgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 40888082 - 40888136
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  40888082 tgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctcttt 40888136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 1815737 - 1815809
Alignment:
Q  312 gccacatgtcacaaatatgtggg--tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||| ||||||||||||||| |  |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  1815737 gccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctctt 1815809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 19596188 - 19596258
Alignment:
Q  312 gccacatgtcacaaatatg--tgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||||| ||  ||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  19596188 gccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 33404576 - 33404627
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 380  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  33404576 tgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 14831595 - 14831555
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 369  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14831595 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 4300664 - 4300737
Alignment:
Q  312 gccacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcttt 383  Q
    |||| ||||||||||||||||  ||||||||||| | |||| |||||||  |||||||||||||||||||||||    
T  4300664 gccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctcttt 4300737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 27553513 - 27553566
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctt 382  Q
    ||||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  27553513 tgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctctt 27553566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 9408179 - 9408231
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    |||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  9408179 tgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagagctct 9408231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 40887939 - 40887990
Alignment:
Q  189 aaggaaaaagatatgtagacacccttctttgatacacctcttatgtacacccc 241  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  40887939 aaggaaaaagataggtagacaccctt-tttcatacacctcttatgtacacccc 40887990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 17225385 - 17225318
Alignment:
Q  314 cacatgtcacaaatatgtg--ggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 381  Q
    |||||||||||||| ||||  |||||||||| ||  ||||||||||| ||||||||||||||||||||||    
T  17225385 cacatgtcacaaatgtgtgtgggtgtaaaagagt--atgccacctaaagtggttcatgtataagagctct 17225318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 19596067 - 19596122
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    ||||||||||| ||||||| |||| ||||| | |||||||||||||||||||||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtg 19596122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 41003970 - 41004031
Alignment:
Q  312 gccacatgtcacaaatatgt--gggtgtaaaagggtgtatgccacctaaggtggttcatgta 371  Q
    ||||||||||| |||| |||  | ||||||||||||||||||||||||| ||||||||||||    
T  41003970 gccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 2237468 - 2237419
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacacccc 241  Q
    ||||||||||| |||||||||||| ||| |||||| |||||||||||||||    
T  2237468 ggaaaaagataggtagacaccctt-tttcatacacttcttatgtacacccc 2237419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 31800751 - 31800698
Alignment:
Q  189 aaggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccat 243  Q
    ||||||||||||| | |||||||||| ||| ||||||||||| ||||||||||||    
T  31800751 aaggaaaaagataggcagacaccctt-tttcatacacctcttgtgtacaccccat 31800698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 39371119 - 39371070
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacacccc 241  Q
    ||||||||||| |||||||||||| ||| |||||| |||||||||||||||    
T  39371119 ggaaaaagataggtagacaccctt-tttcatacacttcttatgtacacccc 39371070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 13347320 - 13347272
Alignment:
Q  191 ggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccc 240  Q
    ||||||||||| |||||||||||| ||| |||||| ||||||||||||||    
T  13347320 ggaaaaagataggtagacaccctt-tttcatacacttcttatgtacaccc 13347272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 14831739 - 14831687
Alignment:
Q  188 aaaggaaaaagatatgtagacacccttctttgatacacctcttatgtacacccc 241  Q
    |||||||||||||| ||| |||||||| ||| |||||| |||||||||||||||    
T  14831739 aaaggaaaaagataggtaaacaccctt-tttcatacacttcttatgtacacccc 14831687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 6769 - 6722
Alignment:
Q  329 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769 tgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 87285 - 87350
Alignment:
Q  312 gccacatgtcacaaatatgtg-ggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 376  Q
    ||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  87285 gccacgtgtcacaaatgtgtgtggtgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 87161 - 87216
Alignment:
Q  190 aggaaaaagatatgtagacacccttctttgatacacctcttatgtacaccccatgtg 246  Q
    |||||||||||| ||||||||| || ||| |||||||| ||||||||||||||||||    
T  87161 aggaaaaagataggtagacaccttt-tttcatacaccttttatgtacaccccatgtg 87216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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