View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1446_low_9 (Length: 424)
Name: NF1446_low_9
Description: NF1446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1446_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 5050684 - 5051087
Alignment:
| Q |
1 |
tttataaccactttcccacacagctttagctattctccccgatgtgggacttataccagtgctaatatgctac---ccacacaaattttgttaacaattc |
97 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5050684 |
tttataaccactttcccacacagcttcagctattctccccgatgtgggacttataccagtgctaatatgctactacccacacaaattttgttaacaattc |
5050783 |
T |
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| Q |
98 |
tacataacgatcttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaaccatgaatccaatgacc |
197 |
Q |
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| T |
5050784 |
tacataaggatgttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaaccatgaatccaatgacc |
5050883 |
T |
|
| Q |
198 |
aacacaatcaatcttatcaatcttcaagcctccaacaaatattccatgagcactttgcaagaacacaacatcaccttcacataacttcaaagagtacaaa |
297 |
Q |
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| T |
5050884 |
aacaca---------atcaatcttcaagcctccaacaaatattccatgagcacgttgcacgaacacaacatcaccttcacataacttcgaatagtataaa |
5050974 |
T |
|
| Q |
298 |
aac-agccattcaaattttcccacaactcacaccaacatgaccattaaaaagatgttatttgcatgtctatcacttggaaaattaatgatgtctcaattt |
396 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5050975 |
aacaagccattcaaattttcccacaactcacaccaacatgaccattaaaaagatgttatttgcatatctatcacttggaaaattaatgatgtctcaattt |
5051074 |
T |
|
| Q |
397 |
tcatcattgttga |
409 |
Q |
| |
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| T |
5051075 |
tcatcattgttga |
5051087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 272
Target Start/End: Complemental strand, 51274824 - 51274658
Alignment:
| Q |
110 |
ttatgctatgttatggatgga-ttggaataggccacaatggaatatcaaa--aaatcatttacaacaattgaaacc-atgaatccaatgaccaacacaat |
205 |
Q |
| |
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| T |
51274824 |
ttatgctatggtatggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccct |
51274725 |
T |
|
| Q |
206 |
caatcttatcaatcttcaagcctccaacaaatattccatgagcactttgcaagaacacaacatcacc |
272 |
Q |
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| T |
51274724 |
caatctcgttagtcttcaagtttccaacaaaaattctatgagcacgttgtaagaacacaacatcacc |
51274658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 409
Target Start/End: Complemental strand, 51274498 - 51274356
Alignment:
| Q |
269 |
caccttcacataacttcaaagagtacaaaaaca-gccattcaaattttcccacaactcacaccaacatgaccattaaaaag-atgttatttgcatgtcta |
366 |
Q |
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|||||||||| | | || ||||||||||||||| ||||||| || ||| |||| || ||||||||||||||||||||| || || | |||||| | | |
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| T |
51274498 |
caccttcacaaagcatcgaagagtacaaaaacaagccattcgaaattttccacgacacacaccaacatgaccattaaatagaatatcatttgctgatgca |
51274399 |
T |
|
| Q |
367 |
tcacttggaaaattaatgatgtctcaattttcatcattgttga |
409 |
Q |
| |
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|
| T |
51274398 |
tcactaggaaaattaatgatttcacatttttcatcattgttga |
51274356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 38783390 - 38783346
Alignment:
| Q |
365 |
tatcacttggaaaattaatgatgtctcaattttcatcattgttga |
409 |
Q |
| |
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||||||||||||||||||||| ||| || |||||| ||||||||| |
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| T |
38783390 |
tatcacttggaaaattaatgaggtcacatttttcaacattgttga |
38783346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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