View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14470_low_1 (Length: 326)
Name: NF14470_low_1
Description: NF14470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14470_low_1 |
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| [»] scaffold0366 (1 HSPs) |
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| [»] scaffold0459 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0366 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 2394 - 2711
Alignment:
| Q |
9 |
gcaaagttgcagaaagaatagacccgttaaaatctaacttacgaaggctgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaa |
108 |
Q |
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|||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2394 |
gcaaagttgcagaaagaatagaaccgtcaaactctaacttacgaaggatgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaa |
2493 |
T |
|
| Q |
109 |
caaacgaatagcctcatgcatgacaaccagggcagactgtagaaagaatgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494 |
caaacgaatagcctcatgcatgacaaccagggcagactgtagaaagaatgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtcc |
2593 |
T |
|
| Q |
209 |
agaataaactgcgacaaatcagaaatggatagctactttggacagcagaaaacacagtcaaataaaccccaaactagcacttgcattcaagcatcattga |
308 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2594 |
agaataaactgcgacaaatcagaaatgtatcgctactttggacagcagaaaacacagtcaaataaaccccaaactagcacttgcattcaagcatcattga |
2693 |
T |
|
| Q |
309 |
gatattttatgttataat |
326 |
Q |
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|||||||||||||||||| |
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| T |
2694 |
gatattttatgttataat |
2711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 2394 - 2711
Alignment:
| Q |
9 |
gcaaagttgcagaaagaatagacccgttaaaatctaacttacgaaggctgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaa |
108 |
Q |
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|||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2394 |
gcaaagttgcagaaagaatagaaccgtcaaactctaacttacgaaggatgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaa |
2493 |
T |
|
| Q |
109 |
caaacgaatagcctcatgcatgacaaccagggcagactgtagaaagaatgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2494 |
caaacgaatagcctcatgcatgacaaccagggcagactgtagaaagaatgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtcc |
2593 |
T |
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| Q |
209 |
agaataaactgcgacaaatcagaaatggatagctactttggacagcagaaaacacagtcaaataaaccccaaactagcacttgcattcaagcatcattga |
308 |
Q |
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|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2594 |
agaataaactgcgacatatcagaaatgtatcgctactttggacagcagaaaacacagtcaaataaaccccaaactagcacttggattcaagcatcattga |
2693 |
T |
|
| Q |
309 |
gatattttatgttataat |
326 |
Q |
| |
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|||||||||||||||||| |
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| T |
2694 |
gatattttatgttataat |
2711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 44372458 - 44372141
Alignment:
| Q |
9 |
gcaaagttgcagaaagaatagacccgttaaaatctaacttacgaaggctgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaa |
108 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44372458 |
gcaaagttgcagaaagaatagaaccgtcaaactctaacttacgaaggatgctacaaaaccagcttaacacggaagcgaaaagaattacaatgcaaagaaa |
44372359 |
T |
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| Q |
109 |
caaacgaatagcctcatgcatgacaaccagggcagactgtagaaagaatgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44372358 |
caaacgaatagcctcatgcatgacaaccagggcagactgtagaaagaatgatctccacacaaaacatctcaagcaattatgacagacctgaaatctgtcc |
44372259 |
T |
|
| Q |
209 |
agaataaactgcgacaaatcagaaatggatagctactttggacagcagaaaacacagtcaaataaaccccaaactagcacttgcattcaagcatcattga |
308 |
Q |
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|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44372258 |
agaataaactgcgacatatcagaaatgtatcgctactttggacagcagaaaacacagtcaaataaaccccaaactagcacttgtattcaagcatcattga |
44372159 |
T |
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| Q |
309 |
gatattttatgttataat |
326 |
Q |
| |
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|||||||||||||||||| |
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| T |
44372158 |
gatattttatgttataat |
44372141 |
T |
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Back To:
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