View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14471_high_10 (Length: 236)
Name: NF14471_high_10
Description: NF14471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14471_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 6941295 - 6941455
Alignment:
| Q |
60 |
agcatcaatggtgttgtataattgtagattgtgtgatctcaaaatccataccatcattcaattcttgctcatttatcttttttgcatatgctttgcaatt |
159 |
Q |
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| T |
6941295 |
agcatcaatggtgttgtataattgtagattgtgtgatctcaaaatccataccatcatacaattcttgctcatttatcgtttttgcatatgctttgcaatt |
6941394 |
T |
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| Q |
160 |
gtactgtctattttctattacagtgtcactggattctcttaattagatttcccatctcatg |
220 |
Q |
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| T |
6941395 |
gtactgtctattttctattacagtgtcactggattctcttaattagatttcccatctcatg |
6941455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 6941251 - 6941292
Alignment:
| Q |
6 |
cgagtttatcgtttt-caatagttttaatcagctcctaaatt |
46 |
Q |
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| T |
6941251 |
cgagtttatcgtttttcaatagttttaatcagctccgaaatt |
6941292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 12806371 - 12806174
Alignment:
| Q |
6 |
cgagtttatcgtttt-caatagttttaatcagctcctaaattgcagcatcaatgcagcatcaatggtgttgtataattgtagattgtgtgatctcaaaat |
104 |
Q |
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| T |
12806371 |
cgagtttatcgtttttcaatagttttaatcagctcccaaattgtagcatcaatggggc-----------tatataattgttgattgtgtgatctcaaaat |
12806283 |
T |
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| Q |
105 |
ccataccatcattcaattcttgctcatttatcttttttgcatatgctttgcaattgtactgtctattttctattacagtgtcactggattctcttaatta |
204 |
Q |
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| T |
12806282 |
ccgtacgatcatacaattctagctcatttatcgtttttccatatgttttgcaat-------aatattatctattacagtgtcactagattctcttaataa |
12806190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 18887404 - 18887551
Alignment:
| Q |
71 |
tgttgtataattgtagattgtgtgatctcaaaatccataccatcattcaattcttgctcatttatcttttttgcatatgctttgcaattgtactgtctat |
170 |
Q |
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| T |
18887404 |
tgttatataattgtaccttttgtgatctcaaaatccatatgatcataaaattctagctcatt-atcgtttttgtatacgctttgcaattgtattatctat |
18887502 |
T |
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| Q |
171 |
tttctattacagtgtcactggattctcttaattagatttcccatctcat |
219 |
Q |
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| T |
18887503 |
ttcctattaatacgtcactagattctcttaattagacttcccatctcat |
18887551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 12804908 - 12804853
Alignment:
| Q |
86 |
gattgtgtgatctcaaaatccataccatcattcaattcttgctcatttatcttttt |
141 |
Q |
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| T |
12804908 |
gattgtgtgatctcaaaatccatacgatcatacaattcttgctcatttatcatttt |
12804853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 12805677 - 12805637
Alignment:
| Q |
17 |
ttttcaatagttttaatcagctcctaaattgcagcatcaat |
57 |
Q |
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| T |
12805677 |
ttttcaatagttttaatcagcttccaaattgtagcatcaat |
12805637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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