View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14471_high_2 (Length: 369)

Name: NF14471_high_2
Description: NF14471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14471_high_2
NF14471_high_2
[»] scaffold0149 (1 HSPs)
scaffold0149 (104-354)||(25936-26186)
[»] chr3 (12 HSPs)
chr3 (16-339)||(668884-669211)
chr3 (62-349)||(797162-797450)
chr3 (109-339)||(2506493-2506726)
chr3 (85-203)||(9507753-9507872)
chr3 (85-203)||(9515728-9515847)
chr3 (243-321)||(3400382-3400460)
chr3 (100-199)||(798084-798184)
chr3 (98-193)||(3259469-3259565)
chr3 (258-312)||(10925931-10925985)
chr3 (269-334)||(3259336-3259401)
chr3 (258-335)||(10946134-10946211)
chr3 (261-321)||(10915943-10916003)
[»] chr8 (2 HSPs)
chr8 (98-336)||(24061417-24061656)
chr8 (101-182)||(22931231-22931313)
[»] chr6 (2 HSPs)
chr6 (228-334)||(18715164-18715270)
chr6 (101-211)||(18715036-18715145)
[»] scaffold0888 (2 HSPs)
scaffold0888 (234-306)||(3031-3103)
scaffold0888 (98-209)||(2895-3007)
[»] scaffold2125 (1 HSPs)
scaffold2125 (226-312)||(740-825)
[»] chr2 (1 HSPs)
chr2 (269-324)||(29797342-29797397)
[»] chr7 (2 HSPs)
chr7 (258-311)||(41621155-41621208)
chr7 (258-294)||(1865997-1866033)


Alignment Details
Target: scaffold0149 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 104 - 354
Target Start/End: Original strand, 25936 - 26186
Alignment:
Q  104 gctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattcacaagctgtcatttagttattttcttgccaaccaa 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25936 gctcacatgattcttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattcacaagctgtcatttagttattttcatgccaaccaa 26035  T
Q  204 taaattaannnnnnnnnnnnnnataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaata 303  Q
    ||||||||              |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  26036 taaattaattttttttctttttataattttaagaacttattagttatatatttttactctaaaataatgataatgaaatgaaataagacggcaataaata 26135  T
Q  304 ttatttagactatcttcttttctctatattttagatttatccccataatct 354  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26136 ttatttagactatcttcttttctctatattttagattaatccccataatct 26186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 668884 - 669211
Alignment:
Q  16 aatatatgtgctccgctggtttgagagtaaactgtgtggatcgaggagtgtgtaaatgtgttccggtatggtggcgaaattttcatgtgctcacatgatt 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  668884 aatatatgtgctccgctggtttgagagcaaactgtgtggatcgaggagtgtgtaaatgtgttccggtatggtggcgaaaatttcatgtgctcacatgatt 668983  T
Q  116 tttcattta--gtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcatttagttattttcttgccaaccaataaatt-aa 211  Q
     ||||||||  |||||||||||||||||| | | ||||| | ||||| || ||| || ||| |||| ||||||||||||||||||| |||||||||| |     
T  668984 cttcatttagtgtgtcagacccaagagagaatacaaatgatatgctataatattccaaaagttgtcttttagttattttcttgccacccaataaattgat 669083  T
Q  212 nnnnnnnnnnnnnnataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttag 311  Q
                  ||||||| |||||||| | ||| ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  669084 ttctttttctttttataatttcaagaacttttgagttatatatttgcactctaaaataatgataatgaaatgaaataagacaacaacaaatattatctag 669183  T
Q  312 actatcttcttttctctatattttagat 339  Q
    | ||| ||||  ||||| ||||||||||    
T  669184 attatattctcctctctttattttagat 669211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 62 - 349
Target Start/End: Original strand, 797162 - 797450
Alignment:
Q  62 agtgtgtaaatgtgttccggtatggtggcgaaattttcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctac 161  Q
    ||||||||||||||||||||||  || ||| || | | ||| |||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||    
T  797162 agtgtgtaaatgtgttccggtacagtcgcggaaatattatgcgctcacatgattcttcatttagtgtcagagccaagagagtacacaaatactctgctac 797261  T
Q  162 aaca-ttcacaagctgtcatttagttattttcttgccaaccaataaattaannnnnnnnnnnnnnataattttaagaacttattagtcatatatttttac 260  Q
    |||| |||||||| |||||||| |||| ||||||||||||||||||||| |              ||||||| |||||||| ||||  |||||||| |||    
T  797262 aacatttcacaaggtgtcatttcgttaatttcttgccaaccaataaattgattttttttctttttataatttcaagaactttttagctatatatttgtac 797361  T
Q  261 tctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttcttttctctatattttagatttatccccat 349  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||| |||| ||||    
T  797362 tctaaaataatgacaatgaaatgaaataagacagcaacaaatattatttagattatcttcttctctttttattttagatatatcaccat 797450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 339
Target Start/End: Complemental strand, 2506726 - 2506493
Alignment:
Q  109 catgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattc-acaagctgtcatttagttattttcttgccaaccaataaa 207  Q
    ||||| |||||||||||||| |||||||||| | |||| |||| ||||||||||| |||| | || |||||||||||||||||||||| || ||||||||    
T  2506726 catgaattttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttcttgtcacccaataaa 2506627  T
Q  208 ttaannnnnnnnnnnnnn--ataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatatt 305  Q
    || |                ||||||| |||||||| ||||| | |||||   |||||||||||||||||||||||||||| |||||||||||  |||||    
T  2506626 ttgatttttattttctttttataatttcaagaactttttagttagatattagcactctaaaataatgataatgaaatgaaacaagacagcaacggatatt 2506527  T
Q  306 atttagactatcttcttttctctatattttagat 339  Q
     |||| | ||||||||| ||||  ||||||||||    
T  2506526 gtttacattatcttcttctctccctattttagat 2506493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 9507872 - 9507753
Alignment:
Q  85 ggtggcgaaattttcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcattta 183  Q
    ||||| |||| | |||||||||||||| ||| |||||||||| |||||||||| | || ||| ||||||||||||| ||  || ||||||||||||||||    
T  9507872 ggtggtgaaactatcatgtgctcacataattcttcatttagtttcagacccaaaatagaacacaaatgctctgctataatgttccacaagctgtcattta 9507773  T
Q  184 gttattttcttgccaaccaa 203  Q
    ||||||||||||||| ||||    
T  9507772 gttattttcttgccacccaa 9507753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 9515847 - 9515728
Alignment:
Q  85 ggtggcgaaattttcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcattta 183  Q
    ||||| |||| | |||||||||||||| ||| |||||||||| |||||||||| | || ||| ||||||||||||| ||  || ||||||||||||||||    
T  9515847 ggtggtgaaactatcatgtgctcacataattcttcatttagtttcagacccaaaatagaacacaaatgctctgctataatgttccacaagctgtcattta 9515748  T
Q  184 gttattttcttgccaaccaa 203  Q
    ||||||||||||||| ||||    
T  9515747 gttattttcttgccacccaa 9515728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 3400460 - 3400382
Alignment:
Q  243 ttagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttct 321  Q
    ||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  3400460 ttagttatatatttgaactataaaataatgataatgaaatgaaataagacagcaacaaatattatttaaattatcttct 3400382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 798084 - 798184
Alignment:
Q  100 atgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacat-tcacaagctgtcatttagttattttcttgcca 198  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||| ||  ||| || || |||||||||| ||||||||||    
T  798084 atgtgctcacatgattcttcatttagtgtcggatccaagagagtacataaatactctgctacaatataccacgagttgccatttagttaatttcttgcca 798183  T
Q  199 a 199  Q
    |    
T  798184 a 798184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 3259565 - 3259469
Alignment:
Q  98 tcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcatttagttattttct 193  Q
    |||||||||||||||||| |||||||| || ||||||||||| | |||| ||||| ||| |||||| ||| |||  |||||||||||||||||||||    
T  3259565 tcatgtgctcacatgattcttcatttattgccagacccaagataatacacaaatgatctactacaatattccacgggctgtcatttagttattttct 3259469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 10925985 - 10925931
Alignment:
Q  258 tactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttaga 312  Q
    |||||||| |||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  10925985 tactctaagataatggtaatgaaattaaacaagacagcaataaatattatttaga 10925931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 3259401 - 3259336
Alignment:
Q  269 aatgataatgaaatgaaataagacagcaacaaatattatttagactatcttcttttctctatattt 334  Q
    |||||||||||| | |||||||||||||||||||||| |||| | | ||||||| ||||| |||||    
T  3259401 aatgataatgaacttaaataagacagcaacaaatattgtttatattgtcttcttctctctttattt 3259336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 10946211 - 10946134
Alignment:
Q  258 tactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttcttttctctatatttt 335  Q
    |||||||| |||||| ||||||||| ||| |||||| ||| |||||||||||| | | |||| || ||||| ||||||    
T  10946211 tactctaagataatggtaatgaaatcaaacaagacatcaataaatattatttaaattgtcttattatctctttatttt 10946134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 10916003 - 10915943
Alignment:
Q  261 tctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttct 321  Q
    ||||| ||| || ||||||||| ||||||  ||||||||||||||||||||| | ||||||    
T  10916003 tctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtcttct 10915943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 336
Target Start/End: Original strand, 24061417 - 24061656
Alignment:
Q  98 tcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcatttagttattttcttgc 196  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||| || | |||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  24061417 tcatgtgctcgcatgattcttcatttggtgtcagacccaagagagtccacatatgctctgctacaatattgcacaagccgtcatttagttattttcttgc 24061516  T
Q  197 caaccaataaattaa--nnnnnnnnnnnnnnataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacag 294  Q
    ||||||||||||| |                | ||||| |||||||| ||||| |||||||| |||| |||| ||||||||||||||| ||||||||       
T  24061517 caaccaataaattgatttcttttttctttctaaaatttcaagaactttttagttatatatttatactgtaaattaatgataatgaaataaaataaga--- 24061613  T
Q  295 caacaaatattatttagactatcttctt-ttctctatatttta 336  Q
     ||||||||||||||| | ||||||||| ||||||||||||||    
T  24061614 gaacaaatattatttatattatcttcttcttctctatatttta 24061656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 22931313 - 22931231
Alignment:
Q  101 tgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcattt 182  Q
    ||||||||||||||| |||||||||| | ||||||| || || ||| ||||||||||||||||  || |||||||||||||||    
T  22931313 tgtgctcacatgattcttcatttagttttagacccacgatagcacacaaatgctctgctacaatgttccacaagctgtcattt 22931231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 18715164 - 18715270
Alignment:
Q  228 aattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttcttttctc 327  Q
    ||||| |||||||| ||||   |||||||  |||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||| ||||    
T  18715164 aatttgaagaactttttagatttatatttgcactctaaaataatgataatgaaatgaaataagacagcagcacatattatttagattatattcttctctc 18715263  T
Q  328 tatattt 334  Q
    | |||||    
T  18715264 tttattt 18715270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 18715036 - 18715145
Alignment:
Q  101 tgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattc-acaagctgtcatttagttattttcttgccaa 199  Q
    ||||||||||||||| |||||||| |   |||||| | | |||||| ||||||||  |||||| |||| || ||||||||||||||||||||||  | |     
T  18715036 tgtgctcacatgattcttcatttatttctagaccccaaatagtacacaaatgctc--ctacaatattccacgagctgtcatttagttattttctcacaac 18715133  T
Q  200 ccaataaattaa 211  Q
    ||||||||||||    
T  18715134 ccaataaattaa 18715145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 3031 - 3103
Alignment:
Q  234 aagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatatta 306  Q
    |||||||| ||||| |||||||| |||||||||||| ||||||||||||||| ||||| || |||||||||||    
T  3031 aagaactttttagttatatatttgtactctaaaatattgataatgaaatgaattaagatagaaacaaatatta 3103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 2895 - 3007
Alignment:
Q  98 tcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattc-acaagctgtcatttagttattttcttgc 196  Q
    ||||||||| ||||||||  |||||  ||  || ||| |||| |||||| |||||||||||| ||| |||| | |||||||  |||||||||||||| ||    
T  2895 tcatgtgctaacatgattcatcattaggttccacaccgaagatagtacacaaatgctctgctgcaatattccataagctgttgtttagttattttctcgc 2994  T
Q  197 caaccaataaatt 209  Q
    || | ||||||||    
T  2995 caccaaataaatt 3007  T

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Target: scaffold2125 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 740 - 825
Alignment:
Q  226 ataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttaga 312  Q
    ||||||| |||||||| |||||  |||||| | |||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||    
T  740 ataatttcaagaactttttagttttatattgt-actctaaaataatgataatgaaataaaatatgacaacaacaaatattatgtaga 825  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 29797342 - 29797397
Alignment:
Q  269 aatgataatgaaatgaaataagacagcaacaaatattatttagactatcttctttt 324  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||    
T  29797342 aatgataatgaaatgaaataagatagcaaaaaatattatttagattgtcttctttt 29797397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 41621208 - 41621155
Alignment:
Q  258 tactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttag 311  Q
    ||||||||||| ||| |||||||||||||||||||  ||| |||||||||||||    
T  41621208 tactctaaaattatgctaatgaaatgaaataagacgtcaaaaaatattatttag 41621155  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 1866033 - 1865997
Alignment:
Q  258 tactctaaaataatgataatgaaatgaaataagacag 294  Q
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T  1866033 tactctaaaatattgacaatgaaatgaaataagacag 1865997  T

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