View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14471_low_1 (Length: 463)
Name: NF14471_low_1
Description: NF14471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14471_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 462
Target Start/End: Original strand, 4482796 - 4483252
Alignment:
| Q |
6 |
agcagcacagatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctggg |
105 |
Q |
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| T |
4482796 |
agcaccacaaatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctggg |
4482895 |
T |
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| Q |
106 |
ttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaaggtttttattaaacacttagaaaagtgaagggtgattactctac |
205 |
Q |
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| T |
4482896 |
ttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaaggtttt-attaaacactttgaaaagtgaagcgtgattactctac |
4482994 |
T |
|
| Q |
206 |
tcggaattaattttagtagctgcatcgcgcaggagtccaaaccttttgcaggcgggggaacacacatttgacacagtcacacaatttggattgttagatc |
305 |
Q |
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| T |
4482995 |
tcggaattaattttagttgctgcctcgggcaggagtccaaaccttttgcaggcggggaaacacacatttgacacagtcacacaatttggactgttagatc |
4483094 |
T |
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| Q |
306 |
aagattgacaagtccgagtcttaacattggtaagatgagataaagtcggacatttgcagtccaatctttaacaaacaaaatgaaggatttaatatacttt |
405 |
Q |
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| T |
4483095 |
aagattgacaagtccgagtcttaacattggtaagatgagataaagtcggacatttgcagtccaatctttaacaaacaaaatgaagaatttaatatacttt |
4483194 |
T |
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| Q |
406 |
aggacttac-nnnnnnnnnnnnaatgactaaattgaagagggtgataatttgaaattt |
462 |
Q |
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| T |
4483195 |
aggacttactttttatttttttaatgactaaattgaagagggtgataatttgaaattt |
4483252 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 42796343 - 42796311
Alignment:
| Q |
88 |
ccaaatgtcactgctgggttaatgtgaccacct |
120 |
Q |
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| T |
42796343 |
ccaaatgtcactgctgggttaatgtgaccacct |
42796311 |
T |
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