View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14471_low_2 (Length: 369)

Name: NF14471_low_2
Description: NF14471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14471_low_2
NF14471_low_2
[»] scaffold0149 (1 HSPs)
scaffold0149 (104-354)||(25936-26186)
[»] chr3 (12 HSPs)
chr3 (16-339)||(668884-669211)
chr3 (62-349)||(797162-797450)
chr3 (109-339)||(2506493-2506726)
chr3 (85-203)||(9507753-9507872)
chr3 (85-203)||(9515728-9515847)
chr3 (243-321)||(3400382-3400460)
chr3 (100-199)||(798084-798184)
chr3 (98-193)||(3259469-3259565)
chr3 (258-312)||(10925931-10925985)
chr3 (269-334)||(3259336-3259401)
chr3 (258-335)||(10946134-10946211)
chr3 (261-321)||(10915943-10916003)
[»] chr8 (2 HSPs)
chr8 (98-336)||(24061417-24061656)
chr8 (101-182)||(22931231-22931313)
[»] chr6 (2 HSPs)
chr6 (228-334)||(18715164-18715270)
chr6 (101-211)||(18715036-18715145)
[»] scaffold0888 (2 HSPs)
scaffold0888 (234-306)||(3031-3103)
scaffold0888 (98-209)||(2895-3007)
[»] scaffold2125 (1 HSPs)
scaffold2125 (226-312)||(740-825)
[»] chr2 (1 HSPs)
chr2 (269-324)||(29797342-29797397)
[»] chr7 (2 HSPs)
chr7 (258-311)||(41621155-41621208)
chr7 (258-294)||(1865997-1866033)


Alignment Details
Target: scaffold0149 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 104 - 354
Target Start/End: Original strand, 25936 - 26186
Alignment:
Q  104 gctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattcacaagctgtcatttagttattttcttgccaaccaa 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25936 gctcacatgattcttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattcacaagctgtcatttagttattttcatgccaaccaa 26035  T
Q  204 taaattaannnnnnnnnnnnnnataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaata 303  Q
    ||||||||              |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  26036 taaattaattttttttctttttataattttaagaacttattagttatatatttttactctaaaataatgataatgaaatgaaataagacggcaataaata 26135  T
Q  304 ttatttagactatcttcttttctctatattttagatttatccccataatct 354  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26136 ttatttagactatcttcttttctctatattttagattaatccccataatct 26186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 668884 - 669211
Alignment:
Q  16 aatatatgtgctccgctggtttgagagtaaactgtgtggatcgaggagtgtgtaaatgtgttccggtatggtggcgaaattttcatgtgctcacatgatt 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  668884 aatatatgtgctccgctggtttgagagcaaactgtgtggatcgaggagtgtgtaaatgtgttccggtatggtggcgaaaatttcatgtgctcacatgatt 668983  T
Q  116 tttcattta--gtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcatttagttattttcttgccaaccaataaatt-aa 211  Q
     ||||||||  |||||||||||||||||| | | ||||| | ||||| || ||| || ||| |||| ||||||||||||||||||| |||||||||| |     
T  668984 cttcatttagtgtgtcagacccaagagagaatacaaatgatatgctataatattccaaaagttgtcttttagttattttcttgccacccaataaattgat 669083  T
Q  212 nnnnnnnnnnnnnnataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttag 311  Q
                  ||||||| |||||||| | ||| ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  669084 ttctttttctttttataatttcaagaacttttgagttatatatttgcactctaaaataatgataatgaaatgaaataagacaacaacaaatattatctag 669183  T
Q  312 actatcttcttttctctatattttagat 339  Q
    | ||| ||||  ||||| ||||||||||    
T  669184 attatattctcctctctttattttagat 669211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 62 - 349
Target Start/End: Original strand, 797162 - 797450
Alignment:
Q  62 agtgtgtaaatgtgttccggtatggtggcgaaattttcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctac 161  Q
    ||||||||||||||||||||||  || ||| || | | ||| |||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||    
T  797162 agtgtgtaaatgtgttccggtacagtcgcggaaatattatgcgctcacatgattcttcatttagtgtcagagccaagagagtacacaaatactctgctac 797261  T
Q  162 aaca-ttcacaagctgtcatttagttattttcttgccaaccaataaattaannnnnnnnnnnnnnataattttaagaacttattagtcatatatttttac 260  Q
    |||| |||||||| |||||||| |||| ||||||||||||||||||||| |              ||||||| |||||||| ||||  |||||||| |||    
T  797262 aacatttcacaaggtgtcatttcgttaatttcttgccaaccaataaattgattttttttctttttataatttcaagaactttttagctatatatttgtac 797361  T
Q  261 tctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttcttttctctatattttagatttatccccat 349  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||||| |||| ||||    
T  797362 tctaaaataatgacaatgaaatgaaataagacagcaacaaatattatttagattatcttcttctctttttattttagatatatcaccat 797450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 339
Target Start/End: Complemental strand, 2506726 - 2506493
Alignment:
Q  109 catgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattc-acaagctgtcatttagttattttcttgccaaccaataaa 207  Q
    ||||| |||||||||||||| |||||||||| | |||| |||| ||||||||||| |||| | || |||||||||||||||||||||| || ||||||||    
T  2506726 catgaattttcatttagtgttagacccaagataatacacaaatactctgctacaatattccataaactgtcatttagttattttcttgtcacccaataaa 2506627  T
Q  208 ttaannnnnnnnnnnnnn--ataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatatt 305  Q
    || |                ||||||| |||||||| ||||| | |||||   |||||||||||||||||||||||||||| |||||||||||  |||||    
T  2506626 ttgatttttattttctttttataatttcaagaactttttagttagatattagcactctaaaataatgataatgaaatgaaacaagacagcaacggatatt 2506527  T
Q  306 atttagactatcttcttttctctatattttagat 339  Q
     |||| | ||||||||| ||||  ||||||||||    
T  2506526 gtttacattatcttcttctctccctattttagat 2506493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 9507872 - 9507753
Alignment:
Q  85 ggtggcgaaattttcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcattta 183  Q
    ||||| |||| | |||||||||||||| ||| |||||||||| |||||||||| | || ||| ||||||||||||| ||  || ||||||||||||||||    
T  9507872 ggtggtgaaactatcatgtgctcacataattcttcatttagtttcagacccaaaatagaacacaaatgctctgctataatgttccacaagctgtcattta 9507773  T
Q  184 gttattttcttgccaaccaa 203  Q
    ||||||||||||||| ||||    
T  9507772 gttattttcttgccacccaa 9507753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 9515847 - 9515728
Alignment:
Q  85 ggtggcgaaattttcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcattta 183  Q
    ||||| |||| | |||||||||||||| ||| |||||||||| |||||||||| | || ||| ||||||||||||| ||  || ||||||||||||||||    
T  9515847 ggtggtgaaactatcatgtgctcacataattcttcatttagtttcagacccaaaatagaacacaaatgctctgctataatgttccacaagctgtcattta 9515748  T
Q  184 gttattttcttgccaaccaa 203  Q
    ||||||||||||||| ||||    
T  9515747 gttattttcttgccacccaa 9515728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 3400460 - 3400382
Alignment:
Q  243 ttagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttct 321  Q
    ||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  3400460 ttagttatatatttgaactataaaataatgataatgaaatgaaataagacagcaacaaatattatttaaattatcttct 3400382  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 798084 - 798184
Alignment:
Q  100 atgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacat-tcacaagctgtcatttagttattttcttgcca 198  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||| ||  ||| || || |||||||||| ||||||||||    
T  798084 atgtgctcacatgattcttcatttagtgtcggatccaagagagtacataaatactctgctacaatataccacgagttgccatttagttaatttcttgcca 798183  T
Q  199 a 199  Q
    |    
T  798184 a 798184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 3259565 - 3259469
Alignment:
Q  98 tcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcatttagttattttct 193  Q
    |||||||||||||||||| |||||||| || ||||||||||| | |||| ||||| ||| |||||| ||| |||  |||||||||||||||||||||    
T  3259565 tcatgtgctcacatgattcttcatttattgccagacccaagataatacacaaatgatctactacaatattccacgggctgtcatttagttattttct 3259469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 10925985 - 10925931
Alignment:
Q  258 tactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttaga 312  Q
    |||||||| |||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  10925985 tactctaagataatggtaatgaaattaaacaagacagcaataaatattatttaga 10925931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 3259401 - 3259336
Alignment:
Q  269 aatgataatgaaatgaaataagacagcaacaaatattatttagactatcttcttttctctatattt 334  Q
    |||||||||||| | |||||||||||||||||||||| |||| | | ||||||| ||||| |||||    
T  3259401 aatgataatgaacttaaataagacagcaacaaatattgtttatattgtcttcttctctctttattt 3259336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 10946211 - 10946134
Alignment:
Q  258 tactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttcttttctctatatttt 335  Q
    |||||||| |||||| ||||||||| ||| |||||| ||| |||||||||||| | | |||| || ||||| ||||||    
T  10946211 tactctaagataatggtaatgaaatcaaacaagacatcaataaatattatttaaattgtcttattatctctttatttt 10946134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 10916003 - 10915943
Alignment:
Q  261 tctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttct 321  Q
    ||||| ||| || ||||||||| ||||||  ||||||||||||||||||||| | ||||||    
T  10916003 tctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtcttct 10915943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 98 - 336
Target Start/End: Original strand, 24061417 - 24061656
Alignment:
Q  98 tcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcatttagttattttcttgc 196  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||| || | |||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  24061417 tcatgtgctcgcatgattcttcatttggtgtcagacccaagagagtccacatatgctctgctacaatattgcacaagccgtcatttagttattttcttgc 24061516  T
Q  197 caaccaataaattaa--nnnnnnnnnnnnnnataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacag 294  Q
    ||||||||||||| |                | ||||| |||||||| ||||| |||||||| |||| |||| ||||||||||||||| ||||||||       
T  24061517 caaccaataaattgatttcttttttctttctaaaatttcaagaactttttagttatatatttatactgtaaattaatgataatgaaataaaataaga--- 24061613  T
Q  295 caacaaatattatttagactatcttctt-ttctctatatttta 336  Q
     ||||||||||||||| | ||||||||| ||||||||||||||    
T  24061614 gaacaaatattatttatattatcttcttcttctctatatttta 24061656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 22931313 - 22931231
Alignment:
Q  101 tgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacatt-cacaagctgtcattt 182  Q
    ||||||||||||||| |||||||||| | ||||||| || || ||| ||||||||||||||||  || |||||||||||||||    
T  22931313 tgtgctcacatgattcttcatttagttttagacccacgatagcacacaaatgctctgctacaatgttccacaagctgtcattt 22931231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 18715164 - 18715270
Alignment:
Q  228 aattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttagactatcttcttttctc 327  Q
    ||||| |||||||| ||||   |||||||  |||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||| ||||    
T  18715164 aatttgaagaactttttagatttatatttgcactctaaaataatgataatgaaatgaaataagacagcagcacatattatttagattatattcttctctc 18715263  T
Q  328 tatattt 334  Q
    | |||||    
T  18715264 tttattt 18715270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 18715036 - 18715145
Alignment:
Q  101 tgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattc-acaagctgtcatttagttattttcttgccaa 199  Q
    ||||||||||||||| |||||||| |   |||||| | | |||||| ||||||||  |||||| |||| || ||||||||||||||||||||||  | |     
T  18715036 tgtgctcacatgattcttcatttatttctagaccccaaatagtacacaaatgctc--ctacaatattccacgagctgtcatttagttattttctcacaac 18715133  T
Q  200 ccaataaattaa 211  Q
    ||||||||||||    
T  18715134 ccaataaattaa 18715145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 3031 - 3103
Alignment:
Q  234 aagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatatta 306  Q
    |||||||| ||||| |||||||| |||||||||||| ||||||||||||||| ||||| || |||||||||||    
T  3031 aagaactttttagttatatatttgtactctaaaatattgataatgaaatgaattaagatagaaacaaatatta 3103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 2895 - 3007
Alignment:
Q  98 tcatgtgctcacatgatttttcatttagtgtcagacccaagagagtacataaatgctctgctacaacattc-acaagctgtcatttagttattttcttgc 196  Q
    ||||||||| ||||||||  |||||  ||  || ||| |||| |||||| |||||||||||| ||| |||| | |||||||  |||||||||||||| ||    
T  2895 tcatgtgctaacatgattcatcattaggttccacaccgaagatagtacacaaatgctctgctgcaatattccataagctgttgtttagttattttctcgc 2994  T
Q  197 caaccaataaatt 209  Q
    || | ||||||||    
T  2995 caccaaataaatt 3007  T

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Target: scaffold2125 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 740 - 825
Alignment:
Q  226 ataattttaagaacttattagtcatatatttttactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttaga 312  Q
    ||||||| |||||||| |||||  |||||| | |||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||    
T  740 ataatttcaagaactttttagttttatattgt-actctaaaataatgataatgaaataaaatatgacaacaacaaatattatgtaga 825  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 29797342 - 29797397
Alignment:
Q  269 aatgataatgaaatgaaataagacagcaacaaatattatttagactatcttctttt 324  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||    
T  29797342 aatgataatgaaatgaaataagatagcaaaaaatattatttagattgtcttctttt 29797397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 41621208 - 41621155
Alignment:
Q  258 tactctaaaataatgataatgaaatgaaataagacagcaacaaatattatttag 311  Q
    ||||||||||| ||| |||||||||||||||||||  ||| |||||||||||||    
T  41621208 tactctaaaattatgctaatgaaatgaaataagacgtcaaaaaatattatttag 41621155  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 1866033 - 1865997
Alignment:
Q  258 tactctaaaataatgataatgaaatgaaataagacag 294  Q
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T  1866033 tactctaaaatattgacaatgaaatgaaataagacag 1865997  T

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