View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14471_low_3 (Length: 369)
Name: NF14471_low_3
Description: NF14471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14471_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 40719306 - 40719674
Alignment:
| Q |
1 |
aaatgaaaaaaccaaattattgtgacacctcaaacatattggcacaaatttcaaagcaaataattgccatcttccaaggtttccatgtacttctaagttc |
100 |
Q |
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| T |
40719306 |
aaatgaaaaaaccaaattattgtgacacctcaaacatattggcacaaatttcaaagcaaataattgccatcttccaaggtttccatgtacttctaagttc |
40719405 |
T |
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| Q |
101 |
aactgcatccgaacattctatggccagcagttgaatcctcacattgaacactatccaccctaactaaaacattattggcccccaataaataatcaacttt |
200 |
Q |
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| T |
40719406 |
aactgcatccgaacattctatggccagcagttgaatcctcacattgaacactatccaccctaactaaaacattattggcccccaataaataatcaacttt |
40719505 |
T |
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| Q |
201 |
gtgggtaggnnnnnnnnnnagaagattgatatggctcattttatagtgttacaaccaatttaattaatgggaggcaagactatggtgatgatacaataca |
300 |
Q |
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| T |
40719506 |
gtgggtaggttttttttttagaagattgatatggctcattttatagtgttacaaccaatttaattaatgggaggcaagactatggtgatgatacaataca |
40719605 |
T |
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| Q |
301 |
aacttgctcactatcttcaattcttataatgactaatcaactgccatgaagaaaatactacacgaaact |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40719606 |
aacttgctcactatcttcaattcttataatgactaatcaactgccatgaagaaaatactacacgaaact |
40719674 |
T |
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