View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14471_low_4 (Length: 340)

Name: NF14471_low_4
Description: NF14471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14471_low_4
NF14471_low_4
[»] chr2 (20 HSPs)
chr2 (3-330)||(37091935-37092262)
chr2 (26-89)||(17981594-17981657)
chr2 (18-99)||(5394485-5394566)
chr2 (18-99)||(37179972-37180053)
chr2 (18-82)||(25423833-25423897)
chr2 (18-91)||(31579208-31579281)
chr2 (26-91)||(42745095-42745160)
chr2 (26-99)||(14551571-14551644)
chr2 (16-78)||(7020352-7020414)
chr2 (18-80)||(9438126-9438188)
chr2 (24-99)||(17655756-17655833)
chr2 (18-89)||(18105344-18105414)
chr2 (16-82)||(13835445-13835511)
chr2 (16-58)||(14121894-14121936)
chr2 (27-82)||(1682120-1682175)
chr2 (17-79)||(3562181-3562243)
chr2 (32-82)||(14412824-14412874)
chr2 (21-67)||(39401072-39401118)
chr2 (29-82)||(38372982-38373035)
chr2 (24-80)||(39562260-39562316)
[»] chr4 (23 HSPs)
chr4 (131-302)||(17346262-17346433)
chr4 (131-302)||(17137361-17137529)
chr4 (18-99)||(31307037-31307118)
chr4 (16-99)||(9012357-9012440)
chr4 (17-99)||(35972431-35972513)
chr4 (18-91)||(51626285-51626358)
chr4 (18-82)||(38766178-38766242)
chr4 (18-99)||(46016238-46016319)
chr4 (16-99)||(33529344-33529427)
chr4 (16-82)||(14854692-14854758)
chr4 (18-99)||(46250526-46250607)
chr4 (16-82)||(15133462-15133528)
chr4 (19-89)||(35334079-35334149)
chr4 (24-99)||(45994617-45994692)
chr4 (20-75)||(13948587-13948642)
chr4 (17-67)||(13686690-13686740)
chr4 (39-89)||(32005127-32005177)
chr4 (17-92)||(18841573-18841649)
chr4 (18-99)||(31308386-31308467)
chr4 (17-66)||(36990098-36990147)
chr4 (17-73)||(25768685-25768741)
chr4 (17-61)||(51853784-51853828)
chr4 (145-221)||(55295338-55295414)
[»] chr8 (15 HSPs)
chr8 (21-99)||(2744025-2744103)
chr8 (18-99)||(4124995-4125076)
chr8 (18-99)||(7839224-7839305)
chr8 (16-99)||(19715696-19715780)
chr8 (18-99)||(13468716-13468797)
chr8 (18-99)||(30936093-30936174)
chr8 (32-93)||(39086855-39086916)
chr8 (24-78)||(12958077-12958131)
chr8 (24-99)||(8521793-8521867)
chr8 (18-59)||(30056012-30056053)
chr8 (17-82)||(40320184-40320249)
chr8 (20-91)||(13005657-13005728)
chr8 (24-67)||(36994503-36994546)
chr8 (16-63)||(24988586-24988633)
chr8 (18-59)||(15683018-15683059)
[»] chr7 (25 HSPs)
chr7 (18-99)||(29059894-29059975)
chr7 (18-99)||(31492192-31492273)
chr7 (24-89)||(21747021-21747086)
chr7 (26-106)||(37339697-37339777)
chr7 (26-99)||(28665187-28665260)
chr7 (16-99)||(19477223-19477303)
chr7 (16-99)||(11486715-11486798)
chr7 (24-98)||(31776513-31776587)
chr7 (21-98)||(45778956-45779033)
chr7 (16-92)||(20207584-20207660)
chr7 (16-99)||(33299166-33299249)
chr7 (24-89)||(35707941-35708006)
chr7 (18-99)||(28537479-28537556)
chr7 (18-56)||(14545032-14545070)
chr7 (16-82)||(24172296-24172362)
chr7 (17-67)||(29428795-29428845)
chr7 (16-99)||(32470003-32470088)
chr7 (24-101)||(25421210-25421286)
chr7 (37-90)||(36821060-36821113)
chr7 (23-91)||(3231313-3231381)
chr7 (21-79)||(28828756-28828814)
chr7 (24-82)||(42741797-42741854)
chr7 (25-99)||(1424669-1424745)
chr7 (42-99)||(49118220-49118277)
chr7 (18-54)||(13254117-13254153)
[»] chr5 (10 HSPs)
chr5 (18-99)||(5123469-5123550)
chr5 (18-99)||(10592016-10592097)
chr5 (26-99)||(22187969-22188042)
chr5 (24-99)||(31113429-31113504)
chr5 (16-99)||(25983752-25983835)
chr5 (18-89)||(30784967-30785038)
chr5 (21-99)||(29553631-29553709)
chr5 (17-66)||(36212984-36213033)
chr5 (17-95)||(373739-373817)
chr5 (157-204)||(6796801-6796848)
[»] chr3 (21 HSPs)
chr3 (26-99)||(8757441-8757514)
chr3 (18-99)||(20861337-20861418)
chr3 (18-99)||(27763810-27763891)
chr3 (18-99)||(30995936-30996017)
chr3 (16-99)||(25224786-25224869)
chr3 (20-99)||(1642697-1642776)
chr3 (16-99)||(48204282-48204365)
chr3 (24-99)||(55123192-55123267)
chr3 (16-99)||(38331215-38331299)
chr3 (16-98)||(22288322-22288404)
chr3 (37-93)||(40318426-40318482)
chr3 (17-99)||(44941236-44941317)
chr3 (17-60)||(15446084-15446127)
chr3 (51-98)||(22288643-22288690)
chr3 (16-99)||(40294699-40294782)
chr3 (17-99)||(46725513-46725594)
chr3 (17-58)||(15283159-15283200)
chr3 (25-82)||(39950308-39950365)
chr3 (24-99)||(25739182-25739258)
chr3 (16-82)||(48210948-48211014)
chr3 (39-99)||(43621282-43621342)
[»] scaffold0182 (1 HSPs)
scaffold0182 (18-100)||(26420-26502)
[»] chr1 (20 HSPs)
chr1 (25-99)||(16756178-16756252)
chr1 (18-91)||(42297421-42297494)
chr1 (17-101)||(15642543-15642628)
chr1 (18-99)||(36806700-36806781)
chr1 (18-99)||(49071666-49071747)
chr1 (18-87)||(28724761-28724830)
chr1 (19-82)||(9780977-9781040)
chr1 (34-92)||(18428120-18428178)
chr1 (133-298)||(8571806-8571971)
chr1 (16-93)||(46864178-46864255)
chr1 (24-99)||(22022215-22022290)
chr1 (16-99)||(44913196-44913279)
chr1 (18-59)||(12035639-12035680)
chr1 (43-83)||(7242794-7242834)
chr1 (31-91)||(32534184-32534244)
chr1 (25-64)||(6607700-6607739)
chr1 (24-67)||(10367599-10367642)
chr1 (40-71)||(21774671-21774702)
chr1 (16-82)||(10750684-10750750)
chr1 (26-99)||(39547335-39547408)
[»] chr6 (12 HSPs)
chr6 (19-99)||(12836868-12836948)
chr6 (18-96)||(12411237-12411315)
chr6 (25-99)||(21910301-21910374)
chr6 (21-82)||(28099335-28099396)
chr6 (20-80)||(9536858-9536918)
chr6 (17-69)||(21028843-21028895)
chr6 (17-69)||(21028980-21029032)
chr6 (18-56)||(423744-423782)
chr6 (18-80)||(31412211-31412273)
chr6 (26-81)||(17177235-17177290)
chr6 (17-99)||(278479-278561)
chr6 (17-67)||(28933226-28933276)
[»] scaffold0013 (1 HSPs)
scaffold0013 (25-99)||(29123-29197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (16-82)||(27213-27279)
[»] scaffold0071 (1 HSPs)
scaffold0071 (17-60)||(16065-16108)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 3 - 330
Target Start/End: Complemental strand, 37092262 - 37091935
Alignment:
Q  3 tttaaagtatcatcttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaagac 102  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  37092262 tttaaagtatcatcttgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggtttacaccaaaaaagac 37092163  T
Q  103 taatgttaacagtatgtgatgattcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccac 202  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092162 taatgttaagagtatgtgatgattcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccac 37092063  T
Q  203 cagggcagaactttacttatgttcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092062 cagggcagaactttacttatgttcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 37091963  T
Q  303 tggcatcaaaattaacagccgccctatg 330  Q
    ||||||||||||||||||||||||||||    
T  37091962 tggcatcaaaattaacagccgccctatg 37091935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 17981594 - 17981657
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 89  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  17981594 atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggttta 17981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 5394485 - 5394566
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||  | |||||||| |||||    
T  5394485 tgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaaaa 5394566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 37180053 - 37179972
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||| ||| |||||||||||||| | ||||||||||||||    
T  37180053 tgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacaccaaaaaa 37179972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 25423833 - 25423897
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  25423833 tgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacc 25423897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 31579281 - 31579208
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 91  Q
    ||||| ||||||  |||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||    
T  31579281 tgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 42745160 - 42745095
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 91  Q
    |||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  42745160 atttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 14551571 - 14551644
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||  | |||| |||||||||    
T  14551571 atttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgatttataccaaaaaa 14551644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 7020414 - 7020352
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 78  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||  |||||| ||||||||||    
T  7020414 cttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 9438188 - 9438126
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 80  Q
    ||||| ||||||| ||||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  9438188 tgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 17655756 - 17655833
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagtt--gtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||| | |||||| |||||||||||||||||||||||||  ||||| |||||||||| | ||||| ||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgatttacgccaaaaaa 17655833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 18105414 - 18105344
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 89  Q
    ||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||||||| | ||||||    
T  18105414 tgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggatatccggttta 18105344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 13835511 - 13835445
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    |||||||| |||||| ||||||||||| | ||||||||||| || ||||||||| | ||||||||||    
T  13835511 cttgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggatacc 13835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 14121936 - 14121894
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtct 58  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  14121936 cttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 1682120 - 1682175
Alignment:
Q  27 tttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||||||| | ||| ||||||||||||||||||||||||| || | |||||||||    
T  1682120 tttgggtcctataatactcgagggattagtctccgcagttgcgcacagaggatacc 1682175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3562243 - 3562181
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 79  Q
    |||||| ||||||||||||||||| ||| |||| | |||||| |||||||| |||||| ||||    
T  3562243 ttgccgcccatttgggtcccacaaagcttgaggtactagtcttcgcagttgcgcgcggcggat 3562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 14412824 - 14412874
Alignment:
Q  32 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||| ||||||||    
T  14412824 gtcccataatgctcaaggaattagtctctgcagttgtgcgcgaaggatacc 14412874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 39401118 - 39401072
Alignment:
Q  21 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 67  Q
    ||||||||| |||||||||||||||| | |||||| |||||||||||    
T  39401118 cgtccatttaggtcccacaatgctcgtgagattagactccgcagttg 39401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 38373035 - 38372982
Alignment:
Q  29 tgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||||||||||||||| ||| ||||||||   |||||| ||||||||||||||    
T  38373035 tgggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacc 38372982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 39562260 - 39562316
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 80  Q
    |||||||  |||||||||  |||| |||||| ||||||||||||||| |||||||||    
T  39562260 ccatttgaatcccacaatattcgaaggattaatctccgcagttgtgctcggaggata 39562316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 17346262 - 17346433
Alignment:
Q  131 ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca 230  Q
    |||||||||||||||  |||||||| || |||||||| |||||||| ||||| ||||| ||||||||  | ||||| |||||||| |||||| |||||||    
T  17346262 ataggaatggagtgctacagaggagaaactcatggcaggatggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttca 17346361  T
Q  231 agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 302  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||    
T  17346362 agtaaaagatcagattggtagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatgg 17346433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 302
Target Start/End: Complemental strand, 17137529 - 17137361
Alignment:
Q  131 ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca 230  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||| ||||| ||||| ||||||||  | |||||  |||||   |||||| |||||||    
T  17137529 ataggaatggagtgctgcagaggagaaactcatggcaagatggagtgtatggtacaaattgtccaatctctccaggaaagaac---acttatattcttca 17137433  T
Q  231 agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 302  Q
    |||||||||||||||||| ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  17137432 agtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggaggttatgg 17137361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 31307118 - 31307037
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31307118 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31307037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 9012357 - 9012440
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| ||| |||||    
T  9012357 cttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaaaa 9012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 35972431 - 35972513
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||  |||||||||||||||    
T  35972431 ttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagtttacaccaaaaaa 35972513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 51626358 - 51626285
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 91  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| | ||||||    
T  51626358 tgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccgatttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 38766178 - 38766242
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38766178 tgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 38766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 46016238 - 46016319
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||||||||||||||||||||| | ||||||||||| ||||| ||| |||||||||| | ||||||||||||||    
T  46016238 tgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttacaccaaaaaa 46016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33529344 - 33529427
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||||||| || ||||||||||  | |||||||| |||||    
T  33529344 cttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaaaa 33529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 14854692 - 14854758
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  14854692 cttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 46250607 - 46250526
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| ||||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| | || |||||||||||||    
T  46250607 tgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggataaccggattacaccaaaaaa 46250526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 15133462 - 15133528
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    |||| ||||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||    
T  15133462 cttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 35334149 - 35334079
Alignment:
Q  19 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 89  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||| | ||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggatatccggttta 35334079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 45994617 - 45994692
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||  ||||||||  ||||| |||||||||    
T  45994617 ccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggatacccagtttataccaaaaaa 45994692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 13948642 - 13948587
Alignment:
Q  20 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcgga 75  Q
    |||||||||||  || |||||||||||||||||||||||| ||||||| |||||||    
T  13948642 ccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 13686690 - 13686740
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 67  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  13686690 ttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttg 13686740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 32005177 - 32005127
Alignment:
Q  39 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 89  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  32005177 aatgctcgagagattagtctccgcaattatgcgcggaggatacccggttta 32005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 18841573 - 18841649
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgc-agttgtgcgcggaggataccgggtttacac 92  Q
    |||||| | |||||| ||| |||| |||| |||||||||||||||| ||||| || ||||||||||| |||||||||    
T  18841573 ttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacctggtttacac 18841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 31308386 - 31308467
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| |||| |||||||||||| | ||||||||||||  | |||||||| |||||| |||||   |||||| |||||||    
T  31308386 tgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggagaatacccaatttacatcaaaaaa 31308467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 36990147 - 36990098
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 66  Q
    ||||||||||||||  ||||||||||||||||| |||||| | |||||||    
T  36990147 ttgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagtt 36990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 25768741 - 25768685
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcg 73  Q
    |||||| |||||||||| |||||||||| || |||||||||||| || ||| |||||    
T  25768741 ttgccgcccatttgggtgccacaatgcttgaaggattagtctccacaattgcgcgcg 25768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 51853784 - 51853828
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccg 61  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||    
T  51853784 ttgcggtccattttggtctcacaatactcgagggattagtctccg 51853828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 55295338 - 55295414
Alignment:
Q  145 cagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttactta 221  Q
    ||||| |||||||| |||||||| |||||||| | ||| ||||||||||| || || || ||| ||||||| |||||    
T  55295338 cagcacaggaggaactcatggcaggatggagtttctggcacaaactgtccgatcccgcctgggaagaacttcactta 55295414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 2744025 - 2744103
Alignment:
Q  21 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2744025 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 2744103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 4125076 - 4124995
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  4125076 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacaccaaaaaa 4124995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 7839305 - 7839224
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| || ||||||    
T  7839305 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgggttatacaaaaaaa 7839224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 19715780 - 19715696
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgaggg-attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| ||||||    
T  19715780 cttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctggtttacacaaaaaaa 19715696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 13468797 - 13468716
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  13468797 tgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaaaa 13468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 30936093 - 30936174
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||| | |||| |||||| |||||||||    
T  30936093 tgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcggatgttacccggtttataccaaaaaa 30936174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 39086855 - 39086916
Alignment:
Q  32 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 93  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  39086855 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacc 39086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 12958131 - 12958077
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 78  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  12958131 ccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 8521793 - 8521867
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||| ||||||| |||||| | ||||||||||||||    
T  8521793 ccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgatttacaccaaaaaa 8521867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 30056053 - 30056012
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  30056053 tgccgtccatttgggttccacaatgctcgagggattagtctc 30056012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 40320184 - 40320249
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    |||||||| |||||| |||||| ||||||||| |||||||||| | |||||| |||||||||||||    
T  40320184 ttgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacc 40320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 13005728 - 13005657
Alignment:
Q  20 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 91  Q
    |||||||||| |||||||||| |||| || ||| ||||||||||||| |||||||| ||||||  |||||||    
T  13005728 ccgtccatttaggtcccacaaggctcaagagatcagtctccgcagttctgcgcggaagatacctagtttaca 13005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 36994546 - 36994503
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 67  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  36994546 ccatttgggtcccacaaggctcgagggattagtctctgcagttg 36994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 24988586 - 24988633
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgca 63  Q
    |||||||  |||||| |||||||||| |||||||||||||||||||||    
T  24988586 cttgccgctcatttgagtcccacaatactcgagggattagtctccgca 24988633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 15683018 - 15683059
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctc 59  Q
    ||||| |||||| |||||||||||||||||||||||| ||||    
T  15683018 tgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 29059894 - 29059975
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  29059894 tgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 29059975  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 31492192 - 31492273
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31492192 tgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31492273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 21747086 - 21747021
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 89  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  21747086 ccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 37339777 - 37339697
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaagactaat 106  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||| ||||||    
T  37339777 atttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgatttataccaaaaaatactaat 37339697  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 28665187 - 28665260
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||| ||||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagtttacacaaaaaaa 28665260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 19477303 - 19477223
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| | |||||||||| |||||    
T  19477303 cttgccggccatttgggtcccacaatgct-gagggattagtctccgcagt--tgcgcggaggatagctggtttacacccaaaaa 19477223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 11486798 - 11486715
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| |||||||||| ||||||||||| || ||||||||||  |||||| |||||||||||||| ||||||||| ||||||    
T  11486798 cttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacacaaaaaaa 11486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 31776513 - 31776587
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 98  Q
    |||||||||||||||||| |||||||||||| ||| |||||||| | |||||||||||| |||||| ||||||||    
T  31776513 ccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacctggtttataccaaaaa 31776587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 45778956 - 45779033
Alignment:
Q  21 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 98  Q
    ||||| |||| ||| |||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacaccaaaaa 45779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 20207584 - 20207660
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 92  Q
    |||||||  ||||||| ||| ||||||||||||||||||||||||||||||| || | ||||||||  |||||||||    
T  20207584 cttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatactcggtttacac 20207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33299166 - 33299249
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||| ||||||||| | ||||||||||  | |||||||||||||||||| |||| |||| ||||| ||||||||| ||||||    
T  33299166 cttgccatccatttggattccacaatgcttaatggattagtctccgcagttatgcgtggagaatacccggtttacacaaaaaaa 33299249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 35707941 - 35708006
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 89  Q
    |||||| | ||| ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  35707941 ccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggttta 35708006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 28537479 - 28537556
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| ||||||||||||    ||||| ||||||||||||||||||||||  |||| |||||||| |||||| |||||||||    
T  28537479 tgccgcccatttgggtcc----atgcttgagggattagtctccgcagttgcacgcgaaggatacccggtttataccaaaaaa 28537556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 14545032 - 14545070
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagt 56  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14545032 tgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 24172296 - 24172362
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||||| ||| |||| ||||||||||||||| ||||||||||  ||||||| |||||||| |||||    
T  24172296 cttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 29428845 - 29428795
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 67  Q
    |||||| |||||||| |||||||||| |||||||||||||||| |||||||    
T  29428845 ttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttg 29428795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 32470003 - 32470088
Alignment:
Q  16 cttgccgtccatttgggtcccacaat--gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||||||||| ||||||  ||||||| ||||||| | ||||||||  ||||||||||| | |||||| ||| |||||    
T  32470003 cttgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggatatctggtttatacccaaaaa 32470088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 25421286 - 25421210
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaaga 101  Q
    ||||||||||||||||| |||| |||||||||| |  ||||||||  | ||||||||||  |||||||||||||||||    
T  25421286 ccatttgggtcccacaaagctcaagggattagtgtttgcagttgt-agtggaggatacccagtttacaccaaaaaaga 25421210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  37 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac 90  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||  |||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 3231313 - 3231381
Alignment:
Q  23 tccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 91  Q
    ||||||| |||||||||||| ||||| |||||| |||  ||||||| ||||||||||||| | ||||||    
T  3231313 tccatttaggtcccacaatgttcgagagattagactcaccagttgtacgcggaggatacccgatttaca 3231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 28828814 - 28828756
Alignment:
Q  21 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 79  Q
    |||||||||||||| ||||| |||| | |||||||||| ||||||||  ||||||||||    
T  28828814 cgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgctcgcggaggat 28828756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 42741854 - 42741797
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    |||||||||||| | ||| |||||||||||| |||| ||||||| ||||||||||||||    
T  42741854 ccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacc 42741797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 1424669 - 1424745
Alignment:
Q  25 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcg--cggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||||||  || ||| |||||||||||||||||| |||  || |||| ||| | ||||||||||||||    
T  1424669 catttgggtcccacaagacttgagagattagtctccgcagttgcgcgcacgaaggacacccgatttacaccaaaaaa 1424745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 49118277 - 49118220
Alignment:
Q  42 gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||||||||||||| |||||| ||||| | || |||| ||||||||| ||||||    
T  49118277 gctcgagggattagtctctgcagttttgcgcagtggttacccggtttacacaaaaaaa 49118220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 13254153 - 13254117
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggatta 54  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  13254153 tgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 5123550 - 5123469
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  5123550 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttacaccaaaaaa 5123469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 10592016 - 10592097
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||    
T  10592016 tgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacaccaaaaaa 10592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 22188042 - 22187969
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  22188042 atttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccggcttacaccaaaaaa 22187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 31113429 - 31113504
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||| | ||||||| ||||||    
T  31113429 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacacaaaaaaa 31113504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 25983752 - 25983835
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||  | ||||||||||| |||||||||| |||||    
T  25983752 cttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaaaa 25983835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 30785038 - 30784967
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 89  Q
    |||| ||||||| |||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||    
T  30785038 tgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 29553631 - 29553709
Alignment:
Q  21 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||||||| ||||||| || |||||||||| ||||||||||| ||||||||||  | ||||| |||||||    
T  29553631 cgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggatacccagattacaacaaaaaa 29553709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 36212984 - 36213033
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 66  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  36212984 ttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 373817 - 373739
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaa 95  Q
    |||||||| |||||||||  |||||| || |||||||| |||||||||||| || |||||||||||   ||||||||||    
T  373817 ttgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaatttacaccaa 373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 6796801 - 6796848
Alignment:
Q  157 aattcatggcaagatggagtatatggaacaaactgtccaattccacca 204  Q
    |||||||||||||||||||||   |||||||||||||| |||||||||    
T  6796801 aattcatggcaagatggagtactgggaacaaactgtcctattccacca 6796848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 8757441 - 8757514
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  8757441 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 8757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 20861337 - 20861418
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  20861337 tgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacccagtttataccaaaaaa 20861418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 27763810 - 27763891
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||| ||||||    
T  27763810 tgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggtttacacaaaaaaa 27763891  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 30996017 - 30995936
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||    
T  30996017 tgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctggtttacacctaaaaa 30995936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 25224786 - 25224869
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  25224786 cttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaaaa 25224869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 1642697 - 1642776
Alignment:
Q  20 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||| | | ||||||||||||||    
T  1642697 ccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgatttacaccaaaaaa 1642776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 48204365 - 48204282
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||| ||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||| | |||||||| |||||    
T  48204365 cttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaaaa 48204282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 55123192 - 55123267
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||    
T  55123192 ccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgatttataccaaaaaa 55123267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 38331215 - 38331299
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac-accaaaaaa 99  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||    
T  38331215 cttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaaaaa 38331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 22288322 - 22288404
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 98  Q
    |||| |||||||||| ||  |||||| ||| ||| ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288322 cttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  37 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 93  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 44941317 - 44941236
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||| |||||||| |||||  |||||||||| ||||||||||||||||| |||||||||||| |  ||||| |||||||||    
T  44941317 ttgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggatatccagtttataccaaaaaa 44941236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 15446084 - 15446127
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 60  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  15446084 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 22288643 - 22288690
Alignment:
Q  51 attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 98  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288643 attagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 40294699 - 40294782
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||  ||||||  ||||||||| ||||| ||||||||||||||||||| || |  |||||||| | ||||||||||||||    
T  40294699 cttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgatttacaccaaaaaa 40294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 46725513 - 46725594
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||| |||||| ||||||| |||||||| ||||||||||||||  |||||  |||||||||||||  |||||||||| |||||    
T  46725513 ttgctgtccatctgggtcc-acaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacccaaaaa 46725594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 15283159 - 15283200
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtct 58  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  15283159 ttgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 39950308 - 39950365
Alignment:
Q  25 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||   ||||||||||||    
T  39950308 catttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 25739182 - 25739258
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgca-gttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||||||||| ||  |||||   ||||||||||||| |||| | |||||||||||| ||||||||||||||||    
T  25739182 ccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggatacccggtttacaccaaaaaa 25739258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 48211014 - 48210948
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||||||| |||| ||||||||||| ||||||| |||  ||||||||||||  |||||| ||||||    
T  48211014 cttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacc 48210948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 43621342 - 43621282
Alignment:
Q  39 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||||||||||| | ||||| |||| ||||||||| | || ||| |||||||    
T  43621342 aatgctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaa 43621282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 26420 - 26502
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaag 100  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  26420 tgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaag 26502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 16756178 - 16756252
Alignment:
Q  25 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||||||||||    
T  16756178 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgatttacaccaaaaaa 16756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 42297494 - 42297421
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 91  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  42297494 tgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagtttaca 42297421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 15642543 - 15642628
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca-ccaaaaaaga 101  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| | |||||| ||||||||||    
T  15642543 ttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaaaaaga 15642628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 36806700 - 36806781
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||| |||||    
T  36806700 tgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaaaa 36806781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 49071666 - 49071747
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||| | ||||| |||| | | ||||||||||||||    
T  49071666 tgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttacaccaaaaaa 49071747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 28724761 - 28724830
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtt 87  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  28724761 tgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccggtt 28724830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 9781040 - 9780977
Alignment:
Q  19 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  9781040 gccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacc 9780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 18428178 - 18428120
Alignment:
Q  34 cccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 92  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||    
T  18428178 cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 298
Target Start/End: Complemental strand, 8571971 - 8571806
Alignment:
Q  133 aggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttcaag 232  Q
    ||||||||||| |||||||| ||||| ||||   |||||||||| | ||||||||  ||||| |||||||| ||  ||||||| || ||  | |||||||    
T  8571971 aggaatggagtccagcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaag 8571872  T
Q  233 taaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggtt 298  Q
    |||||||||| |||||||| | || ||| || || || |||||||| ||||| || || |||||||    
T  8571871 taaaagatcaaattggtagtttctattatttcccatctcttgcattccacaaagctgctggtggtt 8571806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 46864178 - 46864255
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 93  Q
    ||||||||||||||||||  ||||||| |||||||||||||||| ||||||| ||||  |||||||| | ||||||||    
T  46864178 cttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacc 46864255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 22022215 - 22022290
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  || ||||||||||  || ||||| ||||||    
T  22022215 ccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacccagtatacacaaaaaaa 22022290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 44913196 - 44913279
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| ||||||  |||| |||||||||   ||||||| ||||||    
T  44913196 cttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacacaaaaaaa 44913279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 12035639 - 12035680
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctc 59  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  12035639 tgccgcccatttgggtcccacaatgctcgagggattagtctc 12035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 7242834 - 7242794
Alignment:
Q  43 ctcgagggattagtctccgcagttgtgcgcggaggataccg 83  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  7242834 ctcgagggattagtctccgcagttgcgcgcggaagataccg 7242794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 32534184 - 32534244
Alignment:
Q  31 ggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 91  Q
    |||| ||||||||||||| | |||||||||||| ||| |||| ||||||||| ||||||||    
T  32534184 ggtctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacctggtttaca 32534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 6607739 - 6607700
Alignment:
Q  25 catttgggtcccacaatgctcgagggattagtctccgcag 64  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  6607739 catttaggtctcacaatgctcgagggattagtctccgcag 6607700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 10367599 - 10367642
Alignment:
Q  24 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 67  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  10367599 ccatttgggtccaacaatgctcgaaggattaatctccgcagttg 10367642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 21774671 - 21774702
Alignment:
Q  40 atgctcgagggattagtctccgcagttgtgcg 71  Q
    ||||||||||||||||||||||||||||||||    
T  21774671 atgctcgagggattagtctccgcagttgtgcg 21774702  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 10750684 - 10750750
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||||| |||||||| || ||||||| |||||||||||||||   |||||| |||| |||||||||    
T  10750684 cttgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacc 10750750  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 39547408 - 39547335
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||| |||| ||||||| |||| |||||| |||||||||||| |||| ||||||  | |||||||||| |||||    
T  39547408 atttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggatttccggtttacacccaaaaa 39547335  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 12836948 - 12836868
Alignment:
Q  19 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||| ||| |||||    
T  12836948 gccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaaaa 12836868  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 12411237 - 12411315
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaa 96  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||| |||||| |||||| ||||||| |||||| ||||||    
T  12411237 tgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccggtttataccaaa 12411315  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 21910301 - 21910374
Alignment:
Q  25 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  21910301 catttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacctggtttacacccaaaaa 21910374  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 28099335 - 28099396
Alignment:
Q  21 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  28099335 cgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 9536858 - 9536918
Alignment:
Q  20 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 80  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||| || |||||||||    
T  9536858 ccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 21028895 - 21028843
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 69  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21028895 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028843  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 21029032 - 21028980
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 69  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21029032 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028980  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 423744 - 423782
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagt 56  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  423744 tgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 31412211 - 31412273
Alignment:
Q  18 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 80  Q
    ||||| |||||||||| ||||||||||||||  |||||||||| |||||| || |||||||||    
T  31412211 tgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggata 31412273  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 17177235 - 17177290
Alignment:
Q  26 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatac 81  Q
    |||||| || |||||| |||||||||||| |||||| | |||||||||||||||||    
T  17177235 atttggatctcacaatactcgagggattaatctccgtaattgtgcgcggaggatac 17177290  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 278479 - 278561
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    ||||||||||||| ||||||||||  ||| |||||||||||  | ||||||  | ||||||||||| | ||||| ||||||||    
T  278479 ttgccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgatttaccccaaaaaa 278561  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 28933226 - 28933276
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 67  Q
    |||||| |||||||||| |||||||||||||| || |||| ||||||||||    
T  28933226 ttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttg 28933276  T

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Target: scaffold0013 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 29197 - 29123
Alignment:
Q  25 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 99  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| | ||||||| ||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacacaaaaaaa 29123  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 27279 - 27213
Alignment:
Q  16 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 82  Q
    ||||||| |||||||| || ||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  27279 cttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggatacc 27213  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 16108 - 16065
Alignment:
Q  17 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 60  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  16108 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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