View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14471_low_6 (Length: 281)
Name: NF14471_low_6
Description: NF14471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14471_low_6 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 13642488 - 13642243
Alignment:
| Q |
19 |
ccatcttcatacccaatctagaatattatgattcaattttttcagaaattgaacaagaagagtattaatcgacccaaaggtaagttaacatgactaaata |
118 |
Q |
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| T |
13642488 |
ccatcttcatacccaatctagaatattatgattctattttttcagaaattgaacaaga---gtattaatcgacccaaaggtaaattaacatgactaaata |
13642392 |
T |
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| Q |
119 |
tcacatgaaaatcaaccattgaaaatttagggttctgttattctatattgtaaattttcaattctattaaacatcac-taaccatttagcaacaaataat |
217 |
Q |
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| T |
13642391 |
tcacatgaaaatcaaccattgaaaatttagggttctgttattttatattgtaaattttcaattctattaaacatcacttaaccatttagcaacaaataat |
13642292 |
T |
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| Q |
218 |
ttcaattcaagtgtgaattttatttgacaatggttcttattgacctatg |
266 |
Q |
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| T |
13642291 |
ttcaattgaagtgtgaattttatttgacaatggttgttattgacctatg |
13642243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 55701 - 55846
Alignment:
| Q |
33 |
aatctagaatattatgattcaattttttcagaaattgaacaagaagagtattaatcgacccaaaggtaagttaacatgactaaatatcacatgaaaatca |
132 |
Q |
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| T |
55701 |
aatctagaatattattattca-ttttttcacaaatggaataagaagaaaatcaatcaacccaaagctaaattgtcatgaccaaattccacatgaaaatca |
55799 |
T |
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| Q |
133 |
accattgaaaattt-agggttctgttattctatattgtaaattttca |
178 |
Q |
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| T |
55800 |
acgattgaaaatttgggggttctgttattttatattgtaaattttca |
55846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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