View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14471_low_8 (Length: 248)
Name: NF14471_low_8
Description: NF14471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14471_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 26492514 - 26492615
Alignment:
| Q |
128 |
ccagatcagaaaatgtgtgattcatttgctatatttgttgcctttgaataccttctttcggaactgagcttgcatattttttgaccagtctagtgatgaa |
227 |
Q |
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| T |
26492514 |
ccagatcagaaaatgtgtgattcatttgctatatttgttgcctttgaataccttctttcggaactgagcttgcatattttttgaccagtctagtgatgaa |
26492613 |
T |
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| Q |
228 |
gt |
229 |
Q |
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|| |
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| T |
26492614 |
gt |
26492615 |
T |
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Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 26492387 - 26492483
Alignment:
| Q |
1 |
ccatcatccttgtgaatggcttattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagac |
97 |
Q |
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| T |
26492387 |
ccatcatccttgtgaatggcttattctcttcacaataaccaataagattcacaaaattcttgtggttcaaccttgataacatctcaatctgaaagac |
26492483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 37747842 - 37747884
Alignment:
| Q |
27 |
tcttcacaataaccaataagattcacaaaattcttgtggttca |
69 |
Q |
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| T |
37747842 |
tcttcacaatatccaataagattgacaaaattcttgtggttca |
37747884 |
T |
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