View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14472_high_4 (Length: 438)
Name: NF14472_high_4
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14472_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 10210637 - 10211047
Alignment:
| Q |
19 |
gataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaaaacacaacaataagtattac |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10210637 |
gataagcagataaataacaagcattctgagaacctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaaaacacaaccataagtattac |
10210736 |
T |
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| Q |
119 |
ttttttaaaatatgtaagcaaggaaatagtcaatgatgtcatttagatggccagtaaaatatgaaaaaagaacaaacattgatatgaaaagatcagggac |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210737 |
ttttttaaaatatgtaagcaaggaaatagttaatgatttcatttagatggccagtaaaatatgaaaaaagaacaaacattgatatgaaaagatcagggac |
10210836 |
T |
|
| Q |
219 |
gaattagtttcatcttaagttcttaacttaaaagatatattgatattatgacaaccaa-aatcagcacaaagataatggcttcactaattgaggtatccc |
317 |
Q |
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| T |
10210837 |
gaattagtttcatcttaagttcttaacttaaaagatatattgatattatgacaacaaacaatcagcacaaagataatggcttcactaattgaggtatccc |
10210936 |
T |
|
| Q |
318 |
agtctaccaacaattaaatttcatcatcactttgactataactacactcttgatttcctgaaacagaagagactcataaatcctataaaatttacataaa |
417 |
Q |
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| T |
10210937 |
aatctaccaacaattaaatttcatcatcactttgactataactacactcttgatttcctgaaacagaagagactcataaatcctataaaacttacataaa |
10211036 |
T |
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| Q |
418 |
tacaacctttg |
428 |
Q |
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| T |
10211037 |
tgcaacctttg |
10211047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 10108525 - 10108439
Alignment:
| Q |
22 |
aagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaaaacacaacaa |
108 |
Q |
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| T |
10108525 |
aagcagataaataacaagcattctgagaacctgattcacaaaagtttaagatgtgtataagcacttatgtttaacaaaacacaacaa |
10108439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 10216420 - 10216476
Alignment:
| Q |
19 |
gataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgt |
75 |
Q |
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| T |
10216420 |
gataagcagataaataacaggcattctgagaacctaattcacaaaagtttaagatgt |
10216476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 9683529 - 9683633
Alignment:
| Q |
133 |
taagcaaggaaatagtcaatgatgtcatttagatggccagtaaaatatgaaaaaa-gaacaaacattgatatgaaaagatcagggacgaattagtttcat |
231 |
Q |
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|||||||||||||||| ||||| |||||||||| || | |||||||| | |||| || ||||||||||||| |||||| |||| || |||| ||||||| |
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| T |
9683529 |
taagcaaggaaatagttaatgaagtcatttagacggaccataaaatatcagaaaatgaccaaacattgatatcaaaagaacaggaactaattggtttcat |
9683628 |
T |
|
| Q |
232 |
cttaa |
236 |
Q |
| |
|
||||| |
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|
| T |
9683629 |
cttaa |
9683633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 9683423 - 9683505
Alignment:
| Q |
20 |
ataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaaaaca |
102 |
Q |
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|||||||| ||||||| |||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||| | ||||||| |
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| T |
9683423 |
ataagcagggaaataaccggcattctgagaacctgatacacgaaagtttaagatgcatataagcatatatgttcagcaaaaca |
9683505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 10105248 - 10105166
Alignment:
| Q |
20 |
ataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaaaaca |
102 |
Q |
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||||||||| |||||||| ||||| | | ||||||||||||||| |||||||||| ||||||| | ||||| ||||||||| |
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| T |
10105248 |
ataagcagagaaataacaggcatttggcgaacctgattcacaaaattttaagatgtacataagcatacatgttcaacaaaaca |
10105166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 10213026 - 10213108
Alignment:
| Q |
20 |
ataagcagataaataacaagcattctgagcacctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaaaaca |
102 |
Q |
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||||||||| |||||||| |||||| | |||||||||| |||| |||||||||| |||| || ||| ||||||||||||| |
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| T |
10213026 |
ataagcagagaaataacaggcattcgacgaacctgattcagaaaattttaagatgtaaataaacatataagtttaacaaaaca |
10213108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 9675554 - 9675602
Alignment:
| Q |
50 |
acctgattcacaaaagtttaagatgtgtataagcacatatgtttaacaa |
98 |
Q |
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|||||||||||||||||||||||||| ||||||| ||| ||| ||||| |
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| T |
9675554 |
acctgattcacaaaagtttaagatgtaaataagcatataagttcaacaa |
9675602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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