View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14472_low_1 (Length: 584)

Name: NF14472_low_1
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14472_low_1
NF14472_low_1
[»] chr2 (8 HSPs)
chr2 (16-570)||(34101908-34102450)
chr2 (374-468)||(33941901-33941995)
chr2 (409-468)||(9477944-9478003)
chr2 (386-468)||(43984999-43985081)
chr2 (374-451)||(34652020-34652097)
chr2 (408-468)||(1810657-1810716)
chr2 (381-453)||(1939323-1939395)
chr2 (371-411)||(3070511-3070551)
[»] chr4 (7 HSPs)
chr4 (374-467)||(2996566-2996659)
chr4 (382-460)||(6987733-6987811)
chr4 (378-446)||(488114-488182)
chr4 (383-467)||(11264294-11264378)
chr4 (371-411)||(17976804-17976844)
chr4 (408-456)||(30668384-30668432)
chr4 (399-467)||(36722678-36722746)
[»] chr5 (1 HSPs)
chr5 (371-456)||(40205055-40205140)
[»] chr1 (5 HSPs)
chr1 (374-468)||(51695478-51695573)
chr1 (371-468)||(15515533-15515630)
chr1 (380-467)||(5756676-5756763)
chr1 (380-456)||(15437967-15438043)
chr1 (374-446)||(35925704-35925776)
[»] chr6 (5 HSPs)
chr6 (374-468)||(20368164-20368258)
chr6 (380-451)||(7148675-7148746)
chr6 (321-363)||(733100-733142)
chr6 (379-456)||(8035137-8035214)
chr6 (374-418)||(8147050-8147094)
[»] chr8 (2 HSPs)
chr8 (371-467)||(11415147-11415243)
chr8 (386-453)||(20672757-20672824)
[»] chr3 (1 HSPs)
chr3 (379-420)||(38319000-38319041)


Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Complemental strand, 34102450 - 34101908
Alignment:
Q  16 atatgttaatttgcaataacttacttactagaagaaagcaaatgagaatttttagcaaatgcctaacaatgattgttcttacacaaaacctcaaaaccta 115  Q
    |||||||||||||||||||||||||    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||        |    
T  34102450 atatgttaatttgcaataacttact----agaacaaagcaaatgaaaatttttagcaaatgcctaacaatgattgttcttacacaaaacct--------a 34102363  T
Q  116 tatccgaaagatgtatagtctggttcgcacaatatgtagaacagtagaacgcctatcaaatgatcatataatcataaataaccaatcaacaacactaaat 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102362 tatcccaaagatgtatagtctggttcgcacaatatgtagaacagtagaacgcctatcaaatgatcatataatcataaataaccaatcaacaacactaaat 34102263  T
Q  216 ctgttccaattataacataatctcagaatcatattctacaaaaattaccaaaatcaaaacctaaatctatttaaagaagtaattactagtgtttatggct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102262 ctgttccaattataacataatctcagaatcatattctacaaaaattaccaaaatcaaaacctaaatctatttaaagaagtaattactagtgtttatggct 34102163  T
Q  316 tgtttgaaattagttaatttgagcttatctactgccataagcacttatcagagtcagtttataaaaacaacttataacatgtacataatctattttcaac 415  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34102162 tgtttgaaattagttaatttgagcttacctactgccataagcacttatcagagtcagtttataaaaacagcttataacatgtacatactctattttcaac 34102063  T
Q  416 ttattctcgtaaactatccaggatagcttataaaaacaactaataacttatacnnnnnnncgtttgactttattttatctcataggaatagcttatacat 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  34102062 ttattctcgtaaactatccaggatagcttataaaaacaactaataacttatacaaaaaaacgtttgactttattttatctcataggaatagcttatacat 34101963  T
Q  516 aagcacttatgctgatctctcactatcccaattccattaacaaacagctaaaatg 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34101962 aagcacttatgctgatctctcactatcccaattccattaacaaacagctaaaatg 34101908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 374 - 468
Target Start/End: Complemental strand, 33941995 - 33941901
Alignment:
Q  374 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 468  Q
    |||| |||||||||||| ||| || ||||| ||  |||||||||||| || |||||| |||| |||||||||| ||||||| | |||||||||||    
T  33941995 ttatgaaaacaacttatgacaagttcataagctgctttcaacttattatcataaactctccaagatagcttatgaaaacaagttataacttatac 33941901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 468
Target Start/End: Complemental strand, 9478003 - 9477944
Alignment:
Q  409 tttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 468  Q
    |||||||||||| || ||| || ||||||||||||||| ||||||||| |||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttataacttatac 9477944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 43984999 - 43985081
Alignment:
Q  386 cttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 468  Q
    ||||||| |||| ||| ||||||||||| |||||| || ||| || | || |||||||||| ||||||||| |||| ||||||    
T  43984999 cttataatatgttcattatctattttcagcttattttcataagctcttcaagatagcttatgaaaacaacttataatttatac 43985081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 34652020 - 34652097
Alignment:
Q  374 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaa 451  Q
    ||||| ||||||||||| |||||| ||||| || |||||||||||||  | ||| || |||| |||||||||| ||||    
T  34652020 ttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 1810716 - 1810657
Alignment:
Q  408 ttttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 468  Q
    |||||| |||||| || |||||| | || |||||||||||||||||||| |||||||||||    
T  1810716 ttttcagcttattttcataaactcttcaagatagcttataaaaacaact-ataacttatac 1810657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 1939323 - 1939395
Alignment:
Q  381 aacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaaca 453  Q
    |||||||||| |||||| ||||| || |||||||||||||  | ||| || ||||| ||||||||| ||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaaca 1939395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 3070511 - 3070551
Alignment:
Q  371 agtttataaaaacaacttataacatgtacataatctatttt 411  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  3070511 agtttataaaaacaacttataacatgtctataaactatttt 3070551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 467
Target Start/End: Complemental strand, 2996659 - 2996566
Alignment:
Q  374 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 467  Q
    |||| |||||||||||| |||||| ||||| || ||||||||||||| || ||  || |||| |||||||||| ||||||||| ||||||||||    
T  2996659 ttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttata 2996566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 460
Target Start/End: Original strand, 6987733 - 6987811
Alignment:
Q  382 acaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaata 460  Q
    ||||||||| |||||| ||||| ||||||||||||||||  | ||| || ||||||||||| || ||||| ||||||||    
T  6987733 acaacttatgacatgtccataaactattttcaacttatttccataagctctccaggatagcgtaaaaaaataactaata 6987811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 446
Target Start/End: Original strand, 488114 - 488182
Alignment:
Q  378 aaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttat 446  Q
    ||||||||||||| |||||| ||||| || |||||| ||||||  |||||| | |||| ||||||||||    
T  488114 aaaaacaacttatgacatgtgcataagctgttttcatcttatttacgtaaattctccaagatagcttat 488182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 467
Target Start/End: Complemental strand, 11264378 - 11264294
Alignment:
Q  383 caacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 467  Q
    |||||||| |||||| ||||| || |||||||||||||  | ||| || || ||||| |||||| ||||||||| ||||| ||||    
T  11264378 caacttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttataacatata 11264294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 17976844 - 17976804
Alignment:
Q  371 agtttataaaaacaacttataacatgtacataatctatttt 411  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  17976844 agtttataaaaacaacttataacatgtctataaactatttt 17976804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 30668384 - 30668432
Alignment:
Q  408 ttttcaacttattctcgtaaactatccaggatagcttataaaaacaact 456  Q
    |||||| |||| | || ||||||||||| ||||||||||||||||||||    
T  30668384 ttttcagcttaatttcataaactatccaagatagcttataaaaacaact 30668432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 36722678 - 36722746
Alignment:
Q  399 cataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 467  Q
    ||||||||||||| | |||||| || ||| || | ||||||| ||||| ||||||||| ||||||||||    
T  36722678 cataatctattttaagcttattttcataagctcttcaggataacttatcaaaacaacttataacttata 36722746  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 456
Target Start/End: Original strand, 40205055 - 40205140
Alignment:
Q  371 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 456  Q
    |||||||| ||||| |||||||||||| |||||||| |||||| ||||||    ||| || ||||||||||||||| |||||||||    
T  40205055 agtttatataaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaact 40205140  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 51695478 - 51695573
Alignment:
Q  374 ttataaaaacaacttataacat-gtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 468  Q
    ||||| ||||||||||| |||| || ||||| ||||||||| |||||| || |||| | |||| |||||||||| |||||| || |||||||||||    
T  51695478 ttatataaacaacttatcacattgttcataagctattttcagcttattttcataaattctccaagatagcttatgaaaacatctgataacttatac 51695573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 468
Target Start/End: Complemental strand, 15515630 - 15515533
Alignment:
Q  371 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 468  Q
    ||||||| |||||||||||| ||||||  |||  |||||||||| |||||  | ||| ||||||| |||| ||||| ||||||||| ||| |||||||    
T  15515630 agtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccataagctatccatgataacttatgaaaacaacttatagcttatac 15515533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 467
Target Start/End: Original strand, 5756676 - 5756763
Alignment:
Q  380 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 467  Q
    ||||| ||||||| ||||| ||||  ||||||||||||||| | |||| || |||||| |||||||  ||||||||| |||| |||||    
T  5756676 aaacaccttataatatgtatataagatattttcaacttattttggtaagctctccaggctagcttacgaaaacaacttataatttata 5756763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 456
Target Start/End: Complemental strand, 15438043 - 15437967
Alignment:
Q  380 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 456  Q
    ||||||||||| |||||| |||||  || ||||| ||||||  |||||||| || |||||||| ||| |||||||||    
T  15438043 aaacaacttatgacatgttcataagttactttcagcttatttccgtaaactctcgaggatagcctatgaaaacaact 15437967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 35925776 - 35925704
Alignment:
Q  374 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttat 446  Q
    |||| |||||| ||||| |||||| ||||| || |||||||||||||  | |||||| |||| ||||||||||    
T  35925776 ttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttat 35925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 20368164 - 20368258
Alignment:
Q  374 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 468  Q
    |||| |||||||||||| |||||| ||||| ||| |||||||||||| || |||  | |||| || ||||||| ||||||||| |||||| ||||    
T  20368164 ttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaacttataactcatac 20368258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 451
Target Start/End: Complemental strand, 7148746 - 7148675
Alignment:
Q  380 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaa 451  Q
    ||||||||||| || ||| ||||| |||||||||||||||| || ||| || |||||| |||||||| ||||    
T  7148746 aaacaacttatgacttgtccataagctattttcaacttattttcataagctctccagggtagcttattaaaa 7148675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 733100 - 733142
Alignment:
Q  321 gaaattagttaatttgagcttatctactgccataagcacttat 363  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||    
T  733100 gaaattggtttatttgagcttatctactaccataagcacttat 733142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 456
Target Start/End: Original strand, 8035137 - 8035214
Alignment:
Q  379 aaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 456  Q
    |||||||||||| |||||  |||||  | ||||||||||||| |||||| || || |||||| ||||| |||||||||    
T  8035137 aaaacaacttatgacatggtcataacttgttttcaacttattttcgtaagctttctaggataacttatgaaaacaact 8035214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 8147050 - 8147094
Alignment:
Q  374 ttataaaaacaacttataacatgtacataatctattttcaactta 418  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||||    
T  8147050 ttatgaaaacaacttataacatatgcataagctattttcaactta 8147094  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 467
Target Start/End: Complemental strand, 11415243 - 11415147
Alignment:
Q  371 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 467  Q
    |||||||  ||||| |||||||||||| ||||| ||||| ||| |||||| ||  ||||| || |||||||||||| |||||| |  ||||||||||    
T  11415243 agtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataacttata 11415147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 20672824 - 20672757
Alignment:
Q  386 cttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaaca 453  Q
    ||||| |||||| ||||| || |||||| |||||| || ||| || ||||||||||||||||||||||    
T  20672824 cttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaaca 20672757  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Complemental strand, 38319041 - 38319000
Alignment:
Q  379 aaaacaacttataacatgtacataatctattttcaacttatt 420  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    
T  38319041 aaaacaacttataacatgttcataagctattttcagcttatt 38319000  T

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