View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14472_low_11 (Length: 249)
Name: NF14472_low_11
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14472_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 3573648 - 3573868
Alignment:
| Q |
11 |
cacagatatgactagttccaatcctactagtagtatgaatgtcacaacaactgatcacaaccctaatagtagtaatgataagatgtatagaggggtgagg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573648 |
cacaaatatgactagttccaatcctactagtagtatcaatgtcacaacaactgatcacaaccctaatagtagtaatgataagatgtatagaggggtgagg |
3573747 |
T |
|
| Q |
111 |
aagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctaggg |
210 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573748 |
aagagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcatatgacacacaagaaaaagcagctaggg |
3573847 |
T |
|
| Q |
211 |
catttgatgcagccctatatt |
231 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3573848 |
catttgatgcagccctatatt |
3573868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 3588977 - 3589160
Alignment:
| Q |
48 |
aatgtcacaacaactgatcacaaccctaatagtagtaatgataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggc |
147 |
Q |
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|||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3588977 |
aatgtcaccacaactgatcaaagccctaatagtagtaataataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtatctgaaattaggc |
3589076 |
T |
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| Q |
148 |
ttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggcatttgatgcagccctatatt |
231 |
Q |
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| T |
3589077 |
ttccaaatagtagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggcatttgatgcagccctatatt |
3589160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 3562480 - 3562624
Alignment:
| Q |
87 |
gataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatg |
186 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3562480 |
gataagatgtacaaaggggtgaggaagagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatg |
3562579 |
T |
|
| Q |
187 |
acacacaagaaaaagcagctagggcatttgatgcagccctatatt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3562580 |
acacacaagaaaaagcagctagggcatttgatgcagccctatatt |
3562624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 3551267 - 3551450
Alignment:
| Q |
48 |
aatgtcacaacaactgatcacaaccctaatagtagtaatgataagatgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggc |
147 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| || ||||||| || || ||||||||||||||||| |||||||||||||| ||||| ||||||| |
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| T |
3551267 |
aatgtcacaccaactgatcaaaaccctaatagtagtgataataagatatacaggggggtgaggaagagaaattggggaaaatgggtatctgagattaggc |
3551366 |
T |
|
| Q |
148 |
ttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggcatttgatgcagccctatatt |
231 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||| |
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|
| T |
3551367 |
ttccaaatagtagggagagaatatggttaggatcatatgacacacaagagaaagcagcaagagcatttgatgcagccctttatt |
3551450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 3551202 - 3551264
Alignment:
| Q |
16 |
atatgactagttccaatcctactagtagtatgaatgtcacaacaactgatcacaaccctaata |
78 |
Q |
| |
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||||| || ||||||||||||||||||| || |||||||| ||||||||||| |||||||||| |
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|
| T |
3551202 |
atatgtcttgttccaatcctactagtagcatcaatgtcaccacaactgatcaaaaccctaata |
3551264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 3562399 - 3562452
Alignment:
| Q |
18 |
atgactagttccaatcctactagtagtatgaatgtcacaacaactgatcacaac |
71 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||| || | |||||||||| |
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|
| T |
3562399 |
atgacttgttccaatcctactagtagtatcaatgtcaccaccaatgatcacaac |
3562452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 40396185 - 40396237
Alignment:
| Q |
101 |
aggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaa |
153 |
Q |
| |
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|||||||||| ||||| | |||||||||||||| ||||||||||||| |||| |
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| T |
40396185 |
aggggtgaggcagagacattggggaaaatgggttgctgaaattaggctaccaa |
40396237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 10025107 - 10025307
Alignment:
| Q |
25 |
gttccaatcctactagtagtatga---atgtcacaacaactgatcacaaccctaatagtagtaatgataagatgtatagaggggtgaggaagagaaaatg |
121 |
Q |
| |
|
||||||||||||| |||||||| | ||||||| ||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
10025107 |
gttccaatcctacgagtagtatcatcaatgtcaccacaactgatcaaaaccctaatagtagtaataacaagatatatagaggggtgaggaagagaaaatg |
10025206 |
T |
|
| Q |
122 |
gggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggcatttgatgca |
221 |
Q |
| |
|
|| | ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
10025207 |
ggta---------tctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcacatgacacacaagaaaaagcagctagagcatttgatgca |
10025297 |
T |
|
| Q |
222 |
gccctatatt |
231 |
Q |
| |
|
|||||||||| |
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|
| T |
10025298 |
gccctatatt |
10025307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 48645819 - 48645712
Alignment:
| Q |
113 |
gagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
212 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| |||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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|
| T |
48645819 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
48645720 |
T |
|
| Q |
213 |
tttgatgc |
220 |
Q |
| |
|
|||||||| |
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|
| T |
48645719 |
tttgatgc |
48645712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 48654232 - 48654125
Alignment:
| Q |
113 |
gagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
212 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| |||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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| T |
48654232 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
48654133 |
T |
|
| Q |
213 |
tttgatgc |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
48654132 |
tttgatgc |
48654125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 18735994 - 18735900
Alignment:
| Q |
94 |
tgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttaggatcatatgac |
188 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| |||| ||||| ||||| ||||| ||||| ||| | |||||||||||||||| || |||||| |
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|
| T |
18735994 |
tgtatagaggagtaaggaagagaaagtgggggaaatatgtgtcagaaatcaggctgccaaacagccgccagagaatatggttaggttcctatgac |
18735900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 18733425 - 18733341
Alignment:
| Q |
94 |
tgtatagaggggtgaggaagagaaaatggggaaaatgggtgtctgaaattaggcttccaaatagcagggagagaatatggttagg |
178 |
Q |
| |
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|||||||||| || |||||||| ||||||||||| | ||||||||||| || || ||||| ||| | | |||||||||||||| |
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| T |
18733425 |
tgtatagaggagtaaggaagaggaaatggggaaagtatgtgtctgaaatcagactaccaaacagccgccaaagaatatggttagg |
18733341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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