View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14472_low_12 (Length: 247)
Name: NF14472_low_12
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14472_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 2361466 - 2361688
Alignment:
| Q |
9 |
aaaatgttaacaccgtcaacgtattcaacttttgttaacttatgttatgtttcagactaacaaactacaacaacacatttttaaaagatagaagaccaaa |
108 |
Q |
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| T |
2361466 |
aaaatgttaacaccgtcaacgtattcaacttttgttaacttatgttatgtttcagactcacaaactacaacaacacatttttaaaagatagaagaccaaa |
2361565 |
T |
|
| Q |
109 |
acttgttaaaaataagataaaggatcaaacacacattttttgtcaaaggtaaaggatgnnnnnnnntctatttaagcctaaataatattaatatttgaaa |
208 |
Q |
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| T |
2361566 |
acttattaaaaataagataaaggatcaaacacacattttttgtcaaaggtaaaggatgaaaaaaactctatttaagcctaaacaatattaatatttgaaa |
2361665 |
T |
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| Q |
209 |
cccacaatgtagttataaattta |
231 |
Q |
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| T |
2361666 |
cccacaatgtagttataaattta |
2361688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 43005014 - 43004963
Alignment:
| Q |
86 |
tttttaaaagatagaagaccaaaacttgttaaaaataagataaaggatcaaa |
137 |
Q |
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| T |
43005014 |
ttttaaaaagataaaggaccaaaacatgttaaaaataagataaaggaccaaa |
43004963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 43005345 - 43005390
Alignment:
| Q |
84 |
catttttaaaagatagaagaccaaaacttgttaaaaataagataaa |
129 |
Q |
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| T |
43005345 |
cattttaaaaagataaaataccaaaacatgttaaaaataagataaa |
43005390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 233124 - 233077
Alignment:
| Q |
100 |
aagaccaaaacttgttaaaaataagataaaggatcaaacacacattttt |
148 |
Q |
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| T |
233124 |
aagaccaaaacatgttaaaaataagaaaaagaatcaaa-acacattttt |
233077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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