View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14472_low_16 (Length: 204)
Name: NF14472_low_16
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14472_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8878535 - 8878323
Alignment:
| Q |
1 |
atggttcaataaattctacaacacatttattagtcacaaccaaaccaaaactttagaaaaattgcgactttaa--------tgatgtcttaaccaagtta |
92 |
Q |
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| T |
8878535 |
atggttcaataaattctacaacacatttattagtcacaaccaaaccaaaactttagaaaaattgcgactttaaatctttaatgatgtcttaaccaagtta |
8878436 |
T |
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| Q |
93 |
ttagactcggtgattaataaactatttgtttgaggacctcgactttgaatcatgactaaaacaattactaattaaac-tttgaatattttgctaaatggt |
191 |
Q |
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| T |
8878435 |
ttagactcggtgattaataaactatttgtttgaggacctcgaatttgaataatgactaaaacaattactaattaaacttttgagtattttgctaaatggt |
8878336 |
T |
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| Q |
192 |
gcgaaatgttttc |
204 |
Q |
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||||||||||||| |
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| T |
8878335 |
gcgaaatgttttc |
8878323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8863259 - 8863319
Alignment:
| Q |
1 |
atggttcaataaattctacaacacatttatt--agtcacaaccaaaccaaaactttagaaa |
59 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||| |
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| T |
8863259 |
atggttcaataaattcaataacacatttatttgagtcacaaccaaaccaaaagtttagaaa |
8863319 |
T |
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