View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14472_low_4 (Length: 439)
Name: NF14472_low_4
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14472_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 38307648 - 38308070
Alignment:
| Q |
1 |
tataggaatgaaaggtgcatggaaataggcatttgacttggaatttgttagggaaatcaaacatatcattcgataccatgcaagggagaagcaaaacaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
38307648 |
tataggaatgaaaggtgcatggaaataggcatttgacttggaatttgttagggaaatcaaa-atatcattcgataccatgcaaaggagaagcaaaacaac |
38307746 |
T |
|
| Q |
101 |
tgagtgctaaatcaaaaatagactgggaaacnnnnnnncagatgtctcccacattatttaaagcaattgacatccaagtattaatcaaagtaacattaat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307747 |
tgagtgctaaatcaaaaatagactgggaaacaaaaaa-cagatgtctcccacattatttaaagcaattgacatccaagtattaatcaaagtaacattaat |
38307845 |
T |
|
| Q |
201 |
aaccattttacaccgttcttgaggaaattcgaactcttcaggttataatgttaaactattaccactaaactagtacatgaagtgtaattgacatgcaagt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307846 |
aaccattttacaccgttcttgaggaaatttgaactcttcaggttataatgttaaactattaccactaaactagtacatgaagtgtaattgacatgcaagt |
38307945 |
T |
|
| Q |
301 |
atgagagaggatagaacttagaagtagaagaggccacttttacttgagccaaaatacgatgtgatgagggaaggggtgatcactaaaacctgagtttttt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38307946 |
atgagagaggatagaacttagaagtagaagaggccacttttacttgagccaaaatacgatgtgatgagggaaggggtgatcactaaaacctgagtttttt |
38308045 |
T |
|
| Q |
401 |
gggaaattaataatatcccatgtga |
425 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
38308046 |
gggaaattaataatatcccatgtga |
38308070 |
T |
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