View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14472_low_7 (Length: 412)
Name: NF14472_low_7
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14472_low_7 |
 | |
|
| [»] scaffold0209 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 5237442 - 5237096
Alignment:
| Q |
1 |
gtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaaaccgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5237442 |
gtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaaaccgtaa |
5237343 |
T |
|
| Q |
101 |
tggatcgtaacaaactctttctctttggaaagagct-ctgataccatatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagag |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5237342 |
tggatcgtaacaaactcttcctctttggaaagagcttctgataccatatcagaaatacaaagaaagggaatgatatgaattctcattactaagaatagag |
5237243 |
T |
|
| Q |
200 |
cttacaacaagtatatatactaataactagtagtatggtaagctacaatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5237242 |
cttacaacaagtatatatactaataactagtagtatggtaagctacaatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaac |
5237143 |
T |
|
| Q |
300 |
taataacaattcaagtgattttgctatcatcaatatcattctgtaat |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5237142 |
taataacaattcaagtgattttgctatcatcaatatcattctgtaat |
5237096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 10636224 - 10635878
Alignment:
| Q |
1 |
gtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaaaccgtaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10636224 |
gtgaaatcgtgaagatttatcacacaaaaaccagaaaaattgatcaaacgaagatcaattgaagaagaagatgcagcggaaaaacggttacaaaccgtta |
10636125 |
T |
|
| Q |
101 |
tggatcgtaacaaactctttctctttggaaagagct-ctgataccatatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagag |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
10636124 |
tggatcgtaacaaactcttcctctttggaaagagcttctgataccatatcagaaatcaaaagaaaaggaatgaaatgaattctcattactaagaatagag |
10636025 |
T |
|
| Q |
200 |
cttacaacaagtatatatactaataactagtagtatggtaagctacaatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
10636024 |
cttacaacaagtatatatactaataactaatagtatggtaagctataatgatctaactatagagtatcaatatcctaagtaaagttacttgtccagcaag |
10635925 |
T |
|
| Q |
300 |
taataacaattcaagtgattttgctatcatcaatatcattctgtaat |
346 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
10635924 |
taataacaattcatgtgatattactatcatcaatatcattctgtaat |
10635878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 146 - 346
Target Start/End: Complemental strand, 5242066 - 5241866
Alignment:
| Q |
146 |
tatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagctac |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5242066 |
tatcagaaatcaaaagaaagggaatgatatgaattctcattactaagaatagagcttacaacaagtatatatactaataactagtagtattgtaagctac |
5241967 |
T |
|
| Q |
246 |
aatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaactaataacaattcaagtgattttgctatcatcaatatcattctgtaa |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5241966 |
aatgatctaactatagagaaacaatatcctaagctaagttacttgtccaacaactaataacaattcaagtgattttgctatcatcaatatcattctgtaa |
5241867 |
T |
|
| Q |
346 |
t |
346 |
Q |
| |
|
| |
|
|
| T |
5241866 |
t |
5241866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 144 - 346
Target Start/End: Complemental strand, 10655465 - 10655263
Alignment:
| Q |
144 |
catatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagct |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10655465 |
catatcagaaatcaaaagaaaaggaatgaaatgaattctcattactaagaatagagcttacaataagtatatatactaataactagtagtatggtaagct |
10655366 |
T |
|
| Q |
244 |
acaatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaactaataacaattcaagtgattttgctatcatcaatatcattctgt |
343 |
Q |
| |
|
| |||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
10655365 |
ataatgatctaactatagagtatcaatatcctaagtaaagttacttgtccagcaagtaataacaattcatgtgatattactatcatcaatatcattctgt |
10655266 |
T |
|
| Q |
344 |
aat |
346 |
Q |
| |
|
||| |
|
|
| T |
10655265 |
aat |
10655263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 144 - 346
Target Start/End: Complemental strand, 10869610 - 10869408
Alignment:
| Q |
144 |
catatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagct |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10869610 |
catatcagaaatcaaaagaaaaggaatgaaatgaattctcattactaagaatagagcttacaataagtatatatactaataactagtagtatggtaagct |
10869511 |
T |
|
| Q |
244 |
acaatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaactaataacaattcaagtgattttgctatcatcaatatcattctgt |
343 |
Q |
| |
|
| |||||||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
10869510 |
ataatgatctaactatagagtatcaatatcctaagtaaagttacttgtccagcaagtaataacaattcatgtgatattactatcatcaatatcattctgt |
10869411 |
T |
|
| Q |
344 |
aat |
346 |
Q |
| |
|
||| |
|
|
| T |
10869410 |
aat |
10869408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 1162780 - 1162813
Alignment:
| Q |
379 |
gcttcgtgtgatttgtgcgaaaacatttcgcacc |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
1162780 |
gcttcgtgtgatttgtgcgaaaatatttcgcacc |
1162813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 14812900 - 14812558
Alignment:
| Q |
1 |
gtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaaaccgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812900 |
gtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaaaccgtaa |
14812801 |
T |
|
| Q |
101 |
tggatcgtaacaaactctttctctttggaaagagct-ctgataccatatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagag |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
14812800 |
tggatcgtaacaaactcttcctctttggaaagagcttctgataccataacagaaatcaaaagaaaggga----tatgaattctcattactaagaatagag |
14812705 |
T |
|
| Q |
200 |
cttacaacaagtatatatactaataactagtagtatggtaagctacaatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812704 |
cttacaacaagtatatatactaataactagtagtatggtaagctacaatgatctaactataaagaaacaatatcctaagctaagttacttgtccagcaac |
14812605 |
T |
|
| Q |
300 |
taataacaattcaagtgattttgctatcatcaatatcattctgtaat |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812604 |
taataacaattcaagtgattttgctatcatcaatatcattctgtaat |
14812558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 149 - 346
Target Start/End: Complemental strand, 14817521 - 14817324
Alignment:
| Q |
149 |
cagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagctacaat |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14817521 |
cagaaatcaaaagaaagggaatgatatgaattctcattactaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagctacaat |
14817422 |
T |
|
| Q |
249 |
gatctaactatagagaaacaatatcctaagctaagttacttgtccagcaactaataacaattcaagtgattttgctatcatcaatatcattctgtaat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14817421 |
gatctaactatagagaaacaatatcctaagctaagttacttgtccaacaactaataacaattcaagtgattttgctatcatcaatatcattctgtaat |
14817324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 2357832 - 2357488
Alignment:
| Q |
1 |
gtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaaaccgtaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2357832 |
gtgaaatcatgaagatttaacacacaaaa-ccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaaaccgtaa |
2357734 |
T |
|
| Q |
101 |
tggatcgtaacaaactctttctctttggaaagagct-ctgataccatatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagag |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| || |||||||| |||||||||||| |||||||||| |
|
|
| T |
2357733 |
tggatcgtaacaaactcttcctctttggaaagagcttctgataccatatcagaaatcagaaggaaatgaatgataa-aattctcattacaaagaatagag |
2357635 |
T |
|
| Q |
200 |
cttacaacaagtatatatactaataactagtagtatggtaagctacaatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
2357634 |
cttacaacaagtatatatactaataactagaagtatggtaagctataatgatctaactctagagaaacaatgtcctaagctgagttacttgtccagcaag |
2357535 |
T |
|
| Q |
300 |
taataacaattcaagtgattttgctatcatcaatatcattctgtaat |
346 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
2357534 |
taataacaaatcaagtgatttcactatcattaatatcattctgtaat |
2357488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 177 - 346
Target Start/End: Complemental strand, 2362252 - 2362083
Alignment:
| Q |
177 |
aattctcattaccaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagctacaatgatctaactatagagaaacaatatccta |
276 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||| ||||| |
|
|
| T |
2362252 |
aattctcattacaaagaatagagcttacaacaagtatatatactaataactagaagtatggtaagctataatgatctaactctggagaaacaatgtccta |
2362153 |
T |
|
| Q |
277 |
agctaagttacttgtccagcaactaataacaattcaagtgattttgctatcatcaatatcattctgtaat |
346 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
2362152 |
agctgagttacttgtccagcaagtaataacaaatcaagtgatttcactatcattaatatcattctgtaat |
2362083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 495362 - 495251
Alignment:
| Q |
235 |
tggtaagctacaatgatctaactatagagaaacaatatcctaagctaagttacttgtccagcaactaataacaattcaagtgattttgctatcatcaata |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
495362 |
tggtaagctacaatgatctaactatagagaaacaatatcctaaactaagttacttgtccagcaactaataacaattcaagtgattttgctatcatcaata |
495263 |
T |
|
| Q |
335 |
tcattctgtaat |
346 |
Q |
| |
|
|||||||||||| |
|
|
| T |
495262 |
tcattctgtaat |
495251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 14579712 - 14579649
Alignment:
| Q |
74 |
cagcggaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagctc |
137 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14579712 |
cagcggaaaaacggttacaaactgttatggatcgtaacaaactcttcctctttggaaagagctc |
14579649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 15996782 - 15996707
Alignment:
| Q |
74 |
cagcggaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagctc-tgataccatat |
148 |
Q |
| |
|
||||| |||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15996782 |
cagcgaaaaaacggttacaaactgttatggatcataacaaactcttcctctttggaaagagctcatgataccatat |
15996707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 1399509 - 1399562
Alignment:
| Q |
357 |
gtaaccggcttttaattgtgctgcttcgtgtgatttgtgcgaaaacatttcgcacc |
412 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1399509 |
gtaacctgcttttaattgtg--gcttcatgtaatttgtgcgaaaatatttcgcacc |
1399562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 74 - 268
Target Start/End: Complemental strand, 187726 - 187530
Alignment:
| Q |
74 |
cagcggaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagct-ctgataccatatcagaaatcaaaagaaagggaatga |
172 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| || ||||||| |||||||| |||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
187726 |
cagcggaaaaacgcttacaaaccgttatggatcgtaacaaacctttcctctttgaaaagagcttctgataccatatcaaaaatcaaaggaaaaggaatga |
187627 |
T |
|
| Q |
173 |
tatgaattctcattaccaagaatagagcttacaacaagtatatata--ctaataactagtagtatggtaagctacaatgatctaactatagagaaaca |
268 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||||||| |||||||| || ||||| ||| || ||||||||| |||||||| |||| |
|
|
| T |
187626 |
aatgaattatcattacttagaatagagcttacaac-agtatatatatgctaataacaagatgtatgagaagttataatgatctacctatagaggaaca |
187530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 146 - 268
Target Start/End: Complemental strand, 621108 - 620986
Alignment:
| Q |
146 |
tatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagctac |
245 |
Q |
| |
|
|||||| ||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
621108 |
tatcaggaatcaaaggaaaaggaatgaaatgaattctcattacttagaatagagcttacaacaagtatatatactaataacaagatgtatggtaagctat |
621009 |
T |
|
| Q |
246 |
aatgatctaactatagagaaaca |
268 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
621008 |
aatgatctaactatagaggaaca |
620986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 614708 - 614593
Alignment:
| Q |
153 |
aatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagctacaatgatc |
252 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
614708 |
aatcaaaggaaaaggaatgaaatgaattctcattacttagaatagagcttacaacaagtatatatactaataacaagatgtatggtaagctataatgatc |
614609 |
T |
|
| Q |
253 |
taactatagagaaaca |
268 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
614608 |
taactatagaggaaca |
614593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 187790 - 187756
Alignment:
| Q |
1 |
gtgaaatcgtgaagatttaacacacaaaaaccaga |
35 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
187790 |
gtgaaatcgtgaagagttaacacacaaaaaccaga |
187756 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 27492 - 27377
Alignment:
| Q |
153 |
aatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataactagtagtatggtaagctacaatgatc |
252 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
27492 |
aatcaaaggaaaaggaatgaaatgaattctcattacttagaatagagcttacaacaagtatatatactaataacaagatgtatggtaagctataatgatc |
27393 |
T |
|
| Q |
253 |
taactatagagaaaca |
268 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
27392 |
taactatagaggaaca |
27377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 8309428 - 8309358
Alignment:
| Q |
79 |
gaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagctc-tgataccatat |
148 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8309428 |
gaaaaacgattacaaaccgttatggatcgtaacaaactcttcctctttggaaagagctcgtgataccatat |
8309358 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 412
Target Start/End: Original strand, 8878306 - 8878338
Alignment:
| Q |
380 |
cttcgtgtgatttgtgcgaaaacatttcgcacc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8878306 |
cttcgtgtgatttgtgcgaaaacatttcgcacc |
8878338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 400
Target Start/End: Original strand, 12938651 - 12938694
Alignment:
| Q |
357 |
gtaaccggcttttaattgtgctgcttcgtgtgatttgtgcgaaa |
400 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
12938651 |
gtaacctgcttttaattgtgcttcttcgtgtggtttgtgcgaaa |
12938694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 9279927 - 9279857
Alignment:
| Q |
79 |
gaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagctc-tgataccatat |
148 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9279927 |
gaaaaacggttacagaccgttatggatcataacaaactcttcctctttggaaagagctcttgataccatat |
9279857 |
T |
|
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