View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14472_low_8 (Length: 319)

Name: NF14472_low_8
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14472_low_8
NF14472_low_8
[»] chr3 (3 HSPs)
chr3 (13-187)||(2361040-2361214)
chr3 (223-309)||(2360916-2361003)
chr3 (83-167)||(32324558-32324642)
[»] chr1 (2 HSPs)
chr1 (65-131)||(44206014-44206080)
chr1 (100-130)||(35383248-35383278)
[»] chr4 (1 HSPs)
chr4 (102-132)||(24794544-24794574)
[»] chr6 (2 HSPs)
chr6 (102-131)||(11668502-11668531)
chr6 (71-131)||(12628197-12628257)
[»] chr2 (2 HSPs)
chr2 (100-153)||(36004551-36004604)
chr2 (101-133)||(9521230-9521262)
[»] chr8 (1 HSPs)
chr8 (100-140)||(6372471-6372511)
[»] chr7 (1 HSPs)
chr7 (74-130)||(24890494-24890550)
[»] chr5 (1 HSPs)
chr5 (105-133)||(5550638-5550666)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 2361214 - 2361040
Alignment:
Q  13 actaggaactaagcgtattatcttgagtgattaatgaactctatgtaggatgaattgtttgggagaaactgagtttgattcttagtgggaacaatttttt 112  Q
    |||| |||||||||| |||| || ||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||| || |||| ||     
T  2361214 actaagaactaagcgaattagctcgagtgattaatgaactctatgtgagatgaatcgtttgggagaaactgagcttgattcttagtggaaataattattg 2361115  T
Q  113 atcagactttacttacctctcggtcaaatttcgggttactagagcccccttcccctagaaaccggatattaatac 187  Q
     ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||    
T  2361114 gtcagactttacttacctctcggtcaaacttcgggttactagagctcccttcccctaaaaaccggatgttaatac 2361040  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 2361003 - 2360916
Alignment:
Q  223 cacgtgtatgtgtaaacaaagtgggaacgttggag-cttgtagttcaaatcgttttatgcaacatcttatcatcattttcttgatatt 309  Q
    ||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2361003 cacgtgtatatgtaaacaaggtgggaatgttggaggcttgtagttcaaatcgttttatgcaacatcttatcatcattttcttgatatt 2360916  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 32324642 - 32324558
Alignment:
Q  83 gagtttgattcttagtgggaacaattttttatcagactttacttacctctcggtcaaatttcgggttactagagcccccttcccc 167  Q
    ||||||||||| | |||||||||||| ||   ||| ||||||||||||| ||| |||| | ||| ||||||| ||||| ||||||    
T  32324642 gagtttgattcctggtgggaacaattcttggccaggctttacttacctcccggccaaactccggattactagggcccctttcccc 32324558  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 44206014 - 44206080
Alignment:
Q  65 aattgtttgggagaaactgagtttgattcttagtgggaacaattttttatcagactttacttacctc 131  Q
    |||||||| |||||| |||||||||||| ||||  |||||| |||||||||||||| | ||||||||    
T  44206014 aattgtttaggagaatctgagtttgatttttaggtggaacagttttttatcagactattcttacctc 44206080  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 35383248 - 35383278
Alignment:
Q  100 ggaacaattttttatcagactttacttacct 130  Q
    |||||||||||||||||||||||||||||||    
T  35383248 ggaacaattttttatcagactttacttacct 35383278  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 132
Target Start/End: Complemental strand, 24794574 - 24794544
Alignment:
Q  102 aacaattttttatcagactttacttacctct 132  Q
    |||||||||||||||||||||||||||||||    
T  24794574 aacaattttttatcagactttacttacctct 24794544  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 11668502 - 11668531
Alignment:
Q  102 aacaattttttatcagactttacttacctc 131  Q
    ||||||||||||||||||||||||||||||    
T  11668502 aacaattttttatcagactttacttacctc 11668531  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 12628257 - 12628197
Alignment:
Q  71 ttgggagaaactgagtttgattcttagtgggaacaattttttatcagactttacttacctc 131  Q
    ||||||||| |||| ||||||| || |  ||||||||||||| ||||| ||||||||||||    
T  12628257 ttgggagaacctgaatttgattgttgggtggaacaattttttgtcagattttacttacctc 12628197  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 36004604 - 36004551
Alignment:
Q  100 ggaacaattttttatcagactttacttacctctcggtcaaatttcgggttacta 153  Q
    ||||||||||||  |||||||||||||| ||| |||||||| | ||||||||||    
T  36004604 ggaacaatttttagtcagactttacttaactcccggtcaaactccgggttacta 36004551  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 9521230 - 9521262
Alignment:
Q  101 gaacaattttttatcagactttacttacctctc 133  Q
    |||||||||||||||||| ||||||||||||||    
T  9521230 gaacaattttttatcagaatttacttacctctc 9521262  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 6372511 - 6372471
Alignment:
Q  100 ggaacaattttttatcagactttacttacctctcggtcaaa 140  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  6372511 ggaacaattttttatcaaactatacttacctctcgatcaaa 6372471  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 24890494 - 24890550
Alignment:
Q  74 ggagaaactgagtttgattcttagtgggaacaattttttatcagactttacttacct 130  Q
    |||||| | ||||||||||| || ||||||||||| ||  |||||||||||||||||    
T  24890494 ggagaacccgagtttgattcctaatgggaacaattcttggtcagactttacttacct 24890550  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 5550666 - 5550638
Alignment:
Q  105 aattttttatcagactttacttacctctc 133  Q
    |||||||||||||||||||||||||||||    
T  5550666 aattttttatcagactttacttacctctc 5550638  T

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