View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14472_low_9 (Length: 315)
Name: NF14472_low_9
Description: NF14472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14472_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 3573364 - 3573676
Alignment:
| Q |
1 |
ctaccaactgagttaagctcacgagtacatatcaatatnnnnnnnnncttaataaatgtaatttggtccaccgaccttgaggaatttgtcaatgtggtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3573364 |
ctaccaactgagttaagctcacgagtacatatcaatataaaaaaa--cttaataaatgtaatttggtctaccgaccttgaggaatttgtcaatgtggtct |
3573461 |
T |
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| Q |
101 |
ttcgcacacaattttttggtccctgctgcagttcccttgcatcattgcattgtaataatttgtctatttcataaataacataaaccctttaaatatgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573462 |
ttcgcacacaattttttggtccctgctgcagttcccttgcatcattgcattgtaataatttgtctatttcataaataacataaaccctttaaatatgaag |
3573561 |
T |
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| Q |
201 |
ctgtcgatttcatgaaaatgatcacaacttatatatatgatcccgttaagtccaatccactcatcaatccatataccaatcatgaacacaaatatgacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573562 |
ctgtcgatttcatgaaaatgatcacaacttatatatatgatcccgttaagtccaatccactcatcaatccatataccaatcatgaacacaaatatgacta |
3573661 |
T |
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| Q |
301 |
gttccaatcctacta |
315 |
Q |
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||||||||||||||| |
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| T |
3573662 |
gttccaatcctacta |
3573676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 37573340 - 37573308
Alignment:
| Q |
2 |
taccaactgagttaagctcacgagtacatatca |
34 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
37573340 |
taccaactgagttaagctcacgaggacatatca |
37573308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 126 - 299
Target Start/End: Original strand, 10024917 - 10025102
Alignment:
| Q |
126 |
ctgcagttcccttgcatcattgcattgtaataatttgtctatttcataaataacataaaccctttaaatatgaagctgtcgatttcatgaaaatgatcac |
225 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || || |
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| T |
10024917 |
ctgcagttcccttgcgtcattgcatggtaataatttgtctatttcataaataacataaaccctttaaaaatgaagctgtcgatttcatggaaatcataac |
10025016 |
T |
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| Q |
226 |
aact----tatatatatgatcccgttaagtcca-atccactcatcaat-------ccatataccaatcatgaacacaaatatgact |
299 |
Q |
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|||| |||||||||| |||| |||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
10025017 |
aacttatatatatatatggtcccattaaacccatatccaatcatcaattcgtataccatataccaatcatgaacacaaatatgact |
10025102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2434498 - 2434526
Alignment:
| Q |
1 |
ctaccaactgagttaagctcacgagtaca |
29 |
Q |
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| T |
2434498 |
ctaccaactgagttaagctcacgagtaca |
2434526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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